Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00978 ATGCCTGCACTTAGCCTGCTGATAACATTGTCCTTGCTGGCTACTACTGCATTTGCTGACATTGGAGACTTCGATGACTACTGGAAAGCACGTGCTGCCGCCGCCGAAAAAGCTGCTGCTGACGCCTATGAACCTGATCCTGAGACCGTCGCCAACACCGTCAATGCTGAAATTGCCCACGCATTGAGTGGAAGGAATAGTACAAGGAGGAATTTGAAGAAATATGCAGGGCCATGTCTAGCCACTAATCCGATCGATCGGTGCTGGAGATGTGACCCCAATTGGGCCCAGAACAGGAAGAAGCTAGCCGATTGTGTTCTGGGTTTTGGCCGCAAGACCACTGGTGGAAAGTTGGGTCCATACTATGTCGTTAACGACTCGTCGGATTCGGACCTCATGAACCCAAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCTCTCAGGAGCTCATCATGACTAGCGACAAGACCATTGATGCAAGAGGTGCTAATGTTCAGATTGCTTATGGTGCTGGCATTACTCTTCAGTACATAAGAAATGTCATCATCCATGGTCTCCGTATCCATCACATTGTTGTTGGTAGCGGTGGAATGATCAGAGACGCTGTCGACCATGTGGGTTTGAGGACTATGAGTGACGGCGATGGCATTTCCATCTTCGGCTCCTCCAATGTTTGGATTGACCATGTGTCCATGTCCAATTGTCATGATGGTCTCATTGATGCTATTATGGGATCTACTGCCATCACTATATCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTTGGAGCGAGTGACGGATACTCACAAGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGCGAATGCCAAGATGTCGATGGGGCTTCTTCCATGTTGTCAACAATGATTACACTCATTGGCTTATGTATGCCATCGGTGGAAGCCAGCATCCCACCATTGTCAGCCAGGGCAATCGTTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGAGAGTACTCACCAGAGCAAGTTTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCAGGTGATCAAAGCAAAAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCAGGGACATACGTTAGAAGAATGACACGTTTTGCAGGCTCGCTCGGCTGCTTCGTTGGTCGCCCTTGCTAA 1299 47.73 MPALSLLITLSLLATTAFADIGDFDDYWKARAAAAEKAAADAYEPDPETVANTVNAEIAHALSGRNSTRRNLKKYAGPCLATNPIDRCWRCDPNWAQNRKKLADCVLGFGRKTTGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLSQELIMTSDKTIDARGANVQIAYGAGITLQYIRNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSNCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSQDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNVYAKEVTKREYSPEQVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVRRMTRFAGSLGCFVGRPC* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15262669 15264208 + Chy10G181720.1 Chy10g00978 235353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00978 432 Gene3D - 82 425 IPR012334 -
Chy10g00978 432 Pfam Pectate lyase 169 348 IPR002022 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Chy10g00978 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Chy10g00978 432 PANTHER PECTATE LYASE 18-RELATED 6 432 IPR045032 GO:0030570
Chy10g00978 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570
Chy10g00978 432 PANTHER PECTATE LYASE 6 432 - -
Chy10g00978 432 SUPERFAMILY Pectin lyase-like 83 422 IPR011050 -
Chy10g00978 432 SMART amb_all 157 354 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00978 Chy-Chr10:15262669 Chy05g00262 Chy-Chr5:2297202 3.20E-169 dispersed
Chy10g00978 Chy-Chr10:15262669 Chy12g01326 Chy-Chr12:17608593 0 wgd
Chy10g00978 Chy-Chr10:15262669 Chy03g00980 Chy-Chr3:13289445 0 wgd
Chy10g00978 Chy-Chr10:15262669 Chy04g01518 Chy-Chr4:21773250 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00978 K01728 - csv:101206497 850.506