Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00979 ATGGAACAAGGGAAGGAGGTTAAGTATTCTGCATTGTCAAACTGCGAATCTTATTTCGAGCGCATCCAATCTACGAAGAAACTTCCGAAATACCTACAGGAGACACTGAATGATGCATTTTCTAGGATCCCAGTTTCATCATTTCCTGGAGTCCCAGGAGGCAGAGTTATTGAGATTCCAGCAGACACAACTATTGCTAATGCTGTAAAGATTCTATCTGAGTGCAACATTTTATCAGCTCCTGTAGTAAATCCAAATGCAAAAGCAAATATGAATTGGAGAGAGAGATACCTTGGAATTGTAGATTATTCGGCCATTATCTTGTGGGTGTTGGAGAGTGCAGAACTTGCTGCAGCTGCTTTATCTGCTGGTTCAGCTACTGCTGTTGGAGTTGGTGCAGGAGCAGTTGGTGCTCTTGGAGCATTGGCATTAGGGGCGACAGGTCCAGTTGCAGTTGCAGGGATAGCTGCAGCAGCGGTTGGAGCTGCTGTGGCTGGTGGAGTTGCTGTTGACAAAGGAATCGGTAAAGATGCTCCAACAGCTGCTGATAATTTAGGAGAAGATTTTTACAAAGTCCTACTGCAAGAAGAACCATTCAAATCAACAACAGTTGAGATGATATTGAAATCCTACCGCTGGGCTCCGTTTCTTCCAGTGACCCTAGATAATTCCATGCTATGTGTCTTACTACTACTTTCAAAATATAGATTGAGGAATGTACCTGTCGTTGAATCAGGGAAACCTGAGATCAAGAATTACATAACTCAATCTGCAGTAGTTCAGGGTCTTGAAAGGTGTAAAGGAAGGGACTGGTTTGACTGTATAGCTGCAAGACCTATTTCTGATTTGGGACTTCCTTTTGTGTCTTGTAAGGAGGTTGTTAGCATCCAAAGCAACGAGTTGATATTGGAAGCTTTCAAACAAATGAGAGAGAATCATATTGGTGGCCTTCCAGTTGTTGAGGGGCCAAAGAAAAGGATTGTGGGAAATATAAGTATAAGAGACATAAGATATTTACTGCTTAAACCTGAACTTTTCTCCAATTTCAGGAAGCTAACCGTTATGGATTTCATCAAAACAGTTGTCACGTTGACTCAAGATGTTGGCAAACTTGCCCCACCAATTACCTGCAGACTTGATTCAACTCTTGGCTTTGTTATCCATAGTCTTGCTTCCAAGTCAGTCCACAGGATCTATGTCGTAGCTGGTGATGAAGAAGTTGTCGGGGTCATCACTCTAAGGGATGTGATCTCTGAAGGCTCTCGCCGCGCTAGGTTACAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGCATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAACTTACGCTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTTCGCTTTGTGTCTAGAATGTTTCACCCTAACATTTATGCCGATGGAAGCATTTGCCTGGACATTCTGCAAAATCAGTGGAGTCCAATCTATGATGTAGCAGCTATACTCACTTCTATTCAGTCGCTTCTGTGCGATCCCAATCCAAACTCTCCTGCAAATTCTGAAGCAGCTAGGATGTTTAGCGAGAATAAGCGCGAGTACAACCGGAGAGTACGTGAAATTGTGGAACAGAGTTGGACTGCTGATTAG 1749 43.57 MEQGKEVKYSALSNCESYFERIQSTKKLPKYLQETLNDAFSRIPVSSFPGVPGGRVIEIPADTTIANAVKILSECNILSAPVVNPNAKANMNWRERYLGIVDYSAIILWVLESAELAAAALSAGSATAVGVGAGAVGALGALALGATGPVAVAGIAAAAVGAAVAGGVAVDKGIGKDAPTAADNLGEDFYKVLLQEEPFKSTTVEMILKSYRWAPFLPVTLDNSMLCVLLLLSKYRLRNVPVVESGKPEIKNYITQSAVVQGLERCKGRDWFDCIAARPISDLGLPFVSCKEVVSIQSNELILEAFKQMRENHIGGLPVVEGPKKRIVGNISIRDIRYLLLKPELFSNFRKLTVMDFIKTVVTLTQDVGKLAPPITCRLDSTLGFVIHSLASKSVHRIYVVAGDEEVVGVITLRDVISEGSRRARLQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15269231 15277271 + Chy10G181730.1 Chy10g00979 235354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00979 582 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 4 418 - -
Chy10g00979 582 PANTHER BNAANNG38820D PROTEIN 4 418 - -
Chy10g00979 582 ProSiteProfiles CBS domain profile. 50 116 IPR000644 -
Chy10g00979 582 CDD CBS_pair_SF 291 417 - -
Chy10g00979 582 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 507 522 IPR023313 -
Chy10g00979 582 CDD UBCc 437 575 IPR000608 -
Chy10g00979 582 Gene3D - 275 420 IPR046342 -
Chy10g00979 582 ProSiteProfiles CBS domain profile. 368 426 IPR000644 -
Chy10g00979 582 CDD CBS_pair_SF 56 107 - -
Chy10g00979 582 Gene3D - 52 267 IPR046342 -
Chy10g00979 582 Gene3D Ubiquitin Conjugating Enzyme 429 578 IPR016135 -
Chy10g00979 582 SUPERFAMILY UBC-like 425 580 IPR016135 -
Chy10g00979 582 SUPERFAMILY CBS-domain pair 274 418 IPR046342 -
Chy10g00979 582 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 434 580 IPR000608 -
Chy10g00979 582 SMART ubc_7 437 580 - -
Chy10g00979 582 Pfam Ubiquitin-conjugating enzyme 438 574 IPR000608 -
Chy10g00979 582 SUPERFAMILY CBS-domain pair 36 261 IPR046342 -
Chy10g00979 582 SMART cbs_1 215 264 IPR000644 -
Chy10g00979 582 SMART cbs_1 55 111 IPR000644 -
Chy10g00979 582 SMART cbs_1 292 341 IPR000644 -
Chy10g00979 582 SMART cbs_1 373 421 IPR000644 -
Chy10g00979 582 Pfam CBS domain 291 341 IPR000644 -
Chy10g00979 582 Pfam CBS domain 373 418 IPR000644 -
Chy10g00979 582 ProSiteProfiles CBS domain profile. 287 347 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00979 - - - csv:101202737 703.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02659 Chy-Chr2:29607228 Chy10g00979 Chy-Chr10:15269231 7.74E-60 dispersed
Chy10g00979 Chy-Chr10:15269231 Chy09g01418 Chy-Chr9:15806255 1.11E-41 dispersed
Chy10g01334 Chy-Chr10:17654952 Chy10g00979 Chy-Chr10:15269231 6.63E-31 dispersed
Chy11g00369 Chy-Chr11:3402169 Chy10g00979 Chy-Chr10:15269231 1.10E-29 dispersed
Chy11g00545 Chy-Chr11:6016921 Chy10g00979 Chy-Chr10:15269231 8.97E-28 dispersed
Chy11g01576 Chy-Chr11:22313686 Chy10g00979 Chy-Chr10:15269231 3.31E-16 dispersed
Chy12g00175 Chy-Chr12:2126593 Chy10g00979 Chy-Chr10:15269231 1.03E-16 dispersed
Chy10g00979 Chy-Chr10:15269231 Chy10g00980 Chy-Chr10:15277536 1.43E-112 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00979 Chy_Chr10 FPKM 27.31493 26.734932 23.091873 21.820337 35.534603 37.365677 34.012409 30.823502 28.415661 28.281101