Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00985 ATGACAAGTAATGGGATGGCTTTTTTTCCAGCAAATTTCATGTTACAACCTTCGCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACTCCTCAAGATTTTCATGGGGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGACGGAAATGGTTGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTTAATATGGAGCAAGTTAAAACACTTGAGAAGAATTTTGAATTGGGGAATAAGCTTGAACCTGAGAGAAAAATGCAGCTTGCTAGAGCTCTTGGTTTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGAAGGGCTCGATGGAAGACTAAACAACTTGAAAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAATGAAGCTCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACTTGAACAAAGAAACAGAGGGATCATGCAGTAACAGAAGTGAAAACAGCTCTGATAACATAAAATTAGACATATCAAGAACACCAGCCATTGATAGTCCTCATCAACAACATCCAACAAATAGGCCACTTTTTCCCACTTCTTCATCATTAAGGCCTCCAGCATTAGCTCAACTCTTTCAAACCTCATCAAGATCATCAGACCATCCACCAAAACAAATTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGACGATCACTCGGGTTTTTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 897 39.24 MTSNGMAFFPANFMLQPSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGTEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQQHPTNRPLFPTSSSLRPPALAQLFQTSSRSSDHPPKQIDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15331665 15333135 - Chy10G181790.1 Chy10g00985 235360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00985 298 Gene3D - 78 147 - -
Chy10g00985 298 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Chy10g00985 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 298 IPR045224 GO:0003700
Chy10g00985 298 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Chy10g00985 298 MobiDBLite consensus disorder prediction 189 256 - -
Chy10g00985 298 Coils Coil 133 181 - -
Chy10g00985 298 CDD homeodomain 86 142 IPR001356 GO:0003677
Chy10g00985 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 298 - -
Chy10g00985 298 MobiDBLite consensus disorder prediction 64 86 - -
Chy10g00985 298 MobiDBLite consensus disorder prediction 17 37 - -
Chy10g00985 298 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Chy10g00985 298 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Chy10g00985 298 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Chy10g00985 298 MobiDBLite consensus disorder prediction 182 278 - -
Chy10g00985 298 SMART HOX_1 84 145 IPR001356 GO:0003677
Chy10g00985 298 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
Chy10g00985 298 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00972 Chy-Chr10:15202738 Chy10g00985 Chy-Chr10:15331665 2.74E-30 dispersed
Chy10g00985 Chy-Chr10:15331665 Chy12g01323 Chy-Chr12:17588638 2.90E-36 dispersed
Chy10g00985 Chy-Chr10:15331665 Chy09g00265 Chy-Chr9:2206181 7.33E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18610 PF00046 Homeodomain 3.00E-15 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00985 K09338 - csv:101221595 583.178