Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00992 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAAGAAGAACAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCACCTAAGAAGCCACCTCCCAAAAGAGCCACCACCAAAGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCTCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTTGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACTATCTCCGCTCCTTCTCATCTTCGGACGAGCTATTTCAGTCCCACCCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTCGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAATTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTCGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAAACGTCGTCAGAGAACTATATGGTTCAAACGAGTACCGGTTCAATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCCACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGGCGGGTGGCGGTGGTGGTGGTGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG 1098 47.91 MIMDGENGIRRPNFPLQLLEKKKEEEEQQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSNYVNVFKQDQGGIDVVETGKKRRSEQSETSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGAGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15398882 15399979 - Chy10G181860.1 Chy10g00992 235367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00992 365 MobiDBLite consensus disorder prediction 343 365 - -
Chy10g00992 365 Pfam TCP family transcription factor 72 194 IPR017887 -
Chy10g00992 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 352 IPR005333 GO:0003700
Chy10g00992 365 MobiDBLite consensus disorder prediction 31 67 - -
Chy10g00992 365 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Chy10g00992 365 MobiDBLite consensus disorder prediction 1 86 - -
Chy10g00992 365 MobiDBLite consensus disorder prediction 16 30 - -
Chy10g00992 365 PANTHER TRANSCRIPTION FACTOR TCP23 11 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00992 - - - csv:101206263 646.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00859 Chy-Chr8:16046613 Chy10g00992 Chy-Chr10:15398882 1.59E-34 dispersed
Chy10g00992 Chy-Chr10:15398882 Chy11g02002 Chy-Chr11:25904458 6.43E-38 dispersed
Chy10g00651 Chy-Chr10:13031263 Chy10g00992 Chy-Chr10:15398882 2.07E-39 transposed
Chy10g00749 Chy-Chr10:13690054 Chy10g00992 Chy-Chr10:15398882 3.40E-44 transposed
Chy11g01807 Chy-Chr11:24424506 Chy10g00992 Chy-Chr10:15398882 9.95E-26 transposed
Chy10g00992 Chy-Chr10:15398882 Chy12g01554 Chy-Chr12:19166908 3.40E-58 wgd
Chy10g00992 Chy-Chr10:15398882 Chy02g02504 Chy-Chr2:28485684 2.51E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g00651 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Chy11g02002 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 3.1e-66 249.2
Chy10g00992 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Chy12g01554 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Chy10g00749 . 47 166 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Chy10g00749 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Chy06g01548 . 42 295 TCP Transcription Factor Family AT3G27010 54.3 2.1e-58 223.0
Chy10g00651 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Chy02g02437 CCT 40 139 TCP Transcription Factor Family AT5G60970 76.2 1.9e-39 160.2
Chy07g00740 . 30 172 TCP Transcription Factor Family AT3G02150 57.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18612 PF03634 TCP 2.60E-38 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00992 Chy_Chr10 FPKM 7.795356 7.45119 8.588066 8.695979 10.585257 9.64837 10.683427 12.402466 14.300243 13.84409