Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00992 ATGATCATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAAGAAGAACAACAACAACAACACCCATGTTCCTCCTCCGCAAACAACGGAGGAACAAAAACAACAACGACAATAACAACAACTCCAAATTCAAATCTTCAATCTTCTTCTTCACCTAAGAAGCCACCTCCCAAAAGAGCCACCACCAAAGACCGTCACACCAAAGTCGATGGCCGTGGTCGTCGGATTCGGATGCCTGCTCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTTGGTCACAAGTCCGACGGTGAAACTATTGAGTGGCTTCTACAACAGGCTGAGCCTGCCGTTATCGCTGCGACTGGTACTGGTACTATTCCAGCTAATTTTACTTCACTTAATATCTCTCTTCGTAGCTCTGGCTCCACTATCTCCGCTCCTTCTCATCTTCGGACGAGCTATTTCAGTCCCACCCAATTCGCCGTTAGAACGAGATCGGATCTTTGGGATAGAACCAACAATCATAATCATAATCTCGTTGATGATTCGTCTACATTCTTGAATTTCAATTCTTCTAATTACGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGATGTAGTCGAGACGGGGAAAAAACGGCGGTCGGAGCAATCGGAAACGTCGTCAGAGAACTATATGGTTCAAACGAGTACCGGTTCAATTCCGGCGAGTCAAAGCAGTCAATTGCCGGCGACATTTTGGATGGTGACGAATCCCACCAATCAAGGGAGTGATCAGATGTGGACATTTCCGTCGGTGGGAAACAGCAGTATGTTAAGAGGGGCGGGTGGCGGTGGTGGTGGTGGCGGAGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATCGGAGGTGGTGGTGGTGGTCCGGCGACGGACAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTATCAGAATCTCCGACAAGAGGAGTCGGCGGCGTTACTTCTAATAATCCTGATCAATCATAG 1098 47.91 MIMDGENGIRRPNFPLQLLEKKKEEEEQQQQHPCSSSANNGGTKTTTTITTTPNSNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRTNNHNHNLVDDSSTFLNFNSSNYVNVFKQDQGGIDVVETGKKRRSEQSETSSENYMVQTSTGSIPASQSSQLPATFWMVTNPTNQGSDQMWTFPSVGNSSMLRGAGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGGGGGGPATDSHLGMLAALSAYRTTMPGLSVSESPTRGVGGVTSNNPDQS* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15398882 15399979 - Chy10G181860.1 Chy10g00992 235367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00992 365 MobiDBLite consensus disorder prediction 343 365 - -
Chy10g00992 365 Pfam TCP family transcription factor 72 194 IPR017887 -
Chy10g00992 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 352 IPR005333 GO:0003700
Chy10g00992 365 MobiDBLite consensus disorder prediction 31 67 - -
Chy10g00992 365 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Chy10g00992 365 MobiDBLite consensus disorder prediction 1 86 - -
Chy10g00992 365 MobiDBLite consensus disorder prediction 16 30 - -
Chy10g00992 365 PANTHER TRANSCRIPTION FACTOR TCP23 11 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00859 Chy-Chr8:16046613 Chy10g00992 Chy-Chr10:15398882 1.59E-34 dispersed
Chy10g00992 Chy-Chr10:15398882 Chy11g02002 Chy-Chr11:25904458 6.43E-38 dispersed
Chy10g00651 Chy-Chr10:13031263 Chy10g00992 Chy-Chr10:15398882 2.07E-39 transposed
Chy10g00749 Chy-Chr10:13690054 Chy10g00992 Chy-Chr10:15398882 3.40E-44 transposed
Chy11g01807 Chy-Chr11:24424506 Chy10g00992 Chy-Chr10:15398882 9.95E-26 transposed
Chy10g00992 Chy-Chr10:15398882 Chy12g01554 Chy-Chr12:19166908 3.40E-58 wgd
Chy10g00992 Chy-Chr10:15398882 Chy02g02504 Chy-Chr2:28485684 2.51E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18612 PF03634 TCP 2.60E-38 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00992 - - csv:101206263 646.736