Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00993 ATGTCGGCAGATTTCTCTACAGAGCGTGCTCTGTTCGGGGGAGCTATAGTTAGCACATTCCCTCTTAGATTCCAGGATGTGAGCAACGTTCGACAAGTTCCTGATCATCAGGAAGTGTTTGTGGATCCATCTCGGGATGAAAGCTTGATCTTTGAGCTTCTAGATTTTAAGCATGATGTTGGTGACAATGGAAGTGCTGTTTGGTTCCTTCAAGACCTTGCGACTGAGCAGGATGCTGAGGGAAGCGTGGTGATTGAGCAATCTGGGGTGATCGAGGCACCTGAACTGTGTTATGGAAATATACCTTCTGTAGCTACAACTGCCGTTGGCCAAATGGCAATTTCAAAGGGCCGGCAAGGAAGAGAAGCTCAAAATATTGTCAGGGTTTATTTGGCAAATCTACGACTTAAGGGAGTTGGTACAGATGTGCTAATCTCTGCATATGAACCCATTGTCATAAATCCTTTGAGCGAAAGTGCTAGCTCTGTCGGCTCTGGTTTGGCCACTCCTGCCTCACACTCAGGTTACATTCCAATGCCTGAGGTATTCAAGCTTGCAGTCTCTAGCTTTAAAGTCTGTGACTGGAGCCTTTTTGGCGCACCTGCCTAA 609 46.8 MSADFSTERALFGGAIVSTFPLRFQDVSNVRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEAPELCYGNIPSVATTAVGQMAISKGRQGREAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLSESASSVGSGLATPASHSGYIPMPEVFKLAVSSFKVCDWSLFGAPA* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15410565 15414030 - Chy10G181870.1 Chy10g00993 235368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00993 202 PANTHER RAN GUANINE NUCLEOTIDE RELEASE FACTOR 2 200 IPR007681 -
Chy10g00993 202 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 5 199 - -
Chy10g00993 202 SUPERFAMILY Mog1p/PsbP-like 7 199 IPR016123 -
Chy10g00993 202 Pfam Ran-interacting Mog1 protein 10 150 IPR007681 -
Chy10g00993 202 PANTHER BNAA07G24140D PROTEIN 2 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00993 - - - csv:101219780 397.897
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g895 . . . . . . . . Cmo04g01730 . . . . . Sed06g1537 . Cpe01g01459 Bhi07g01575 Tan04g1090 Cmetu10g1591 Lac13g0310 Hepe10g1733 . . Cla05g02450 Cam05g2636 Cec05g2669 Cco05g2707 Clacu05g2639 Cmu05g2493 Cre05g2606 . . Cone6ag0596 Cone9ag0599 Lsi04g00433 Csa05g02441 Chy10g00993 Cme10g00424 . . . . . . . . . . . Cma04g01650 . Car04g01691 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008380 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00993 Chy_Chr10 FPKM 3.563477 3.521684 14.452374 14.862954 34.535137 36.571629 37.448189 10.317827 9.998064 10.647125