Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g00997 ATGTCATCATCAGTGCTTGGAGATTTTGGGATTATGAAGCCTAATGACACTGTAGATTTGCATGCTCAACATCAACAGTTCATGAACAATTATCCACAAACATTTTCACATGATCAAATGCAAGGAGCTGCTAGTGACCAGTTTGTTGGAGCCATAAGATCCAATGTTATTGGATCTTATCCTTTGAATATTAGTGATTTGGGGAAGCCAAATTTTATATGGGATTCTTCTTCTTCATGCCCTAGTGAAGTTTCAACAAGGAAACAAAGGGATGTGGTGTTGTTTGGAACATGGTATAGCTCATACTGCACTAGAATTGTGCTAGCACTCAAGATCAAAGGCATAAACTTTGAGTACATTGAAGAAGATTTAGCAAACAAGAGTGAATTGCTTCTCAAGTACAATCCAGTTCATCAAAAAGTCCCTGTACTCATCCACAAAGGAAACCCGATTGCAGAATCCTTTGTCATTCTTGAATACATAGAAGAGCAATGGAACCACCATCCCAAAATTCTTCCCGACCATCCTTACGAAAGAGCCAAACTTCGCTTCTGGGCTCAATTCTATGATCAAAAGATTCTCTTAGGTGCCTTGCCTATTCTCAAATCCATAGGAGAAGAAAGAGAGAGAGCTGTTGAAGCGCTATCAAAATTGATAAGGGTGTTTGAAGATGGAATGAAGAAGGATTTTCCTGGAAAATTTCCATTCTACCATGGAAAAAGCTTGGGATTTCTTGATATAGTTGTTGGGCCCAATGCTTGCAACTATTTGGCACTGCGTGAGGTGGTTGGAGATGTAATTCATTCAAAAAGAAACCTTGATTTTTTCTCATGGGTGGATGCTTTGAAGGAACATCCTCTGATTAAGGAAACTGTTCCTCCTCAACATAAAATGGTGCAGAAACTGAAAGAGAAGATCGCTCTAAAGCCTAAAGATAGCTGA 942 39.17 MSSSVLGDFGIMKPNDTVDLHAQHQQFMNNYPQTFSHDQMQGAASDQFVGAIRSNVIGSYPLNISDLGKPNFIWDSSSSCPSEVSTRKQRDVVLFGTWYSSYCTRIVLALKIKGINFEYIEEDLANKSELLLKYNPVHQKVPVLIHKGNPIAESFVILEYIEEQWNHHPKILPDHPYERAKLRFWAQFYDQKILLGALPILKSIGEERERAVEALSKLIRVFEDGMKKDFPGKFPFYHGKSLGFLDIVVGPNACNYLALREVVGDVIHSKRNLDFFSWVDALKEHPLIKETVPPQHKMVQKLKEKIALKPKDS* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15434043 15436796 + Chy10G181910.1 Chy10g00997 235372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g00997 313 SFLD Glutathione Transferase (cytosolic) 89 306 IPR040079 -
Chy10g00997 313 CDD GST_N_Tau 92 165 - -
Chy10g00997 313 SFLD Main.3: Omega- and Tau-like 89 306 IPR045073 -
Chy10g00997 313 Pfam Glutathione S-transferase, N-terminal domain 93 162 IPR004045 -
Chy10g00997 313 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 89 305 IPR045073 -
Chy10g00997 313 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 175 305 IPR010987 -
Chy10g00997 313 Gene3D Glutaredoxin 86 171 - -
Chy10g00997 313 SUPERFAMILY Thioredoxin-like 91 193 IPR036249 -
Chy10g00997 313 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 90 169 IPR004045 -
Chy10g00997 313 Gene3D - 172 311 - -
Chy10g00997 313 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 89 305 - -
Chy10g00997 313 SUPERFAMILY GST C-terminal domain-like 163 304 IPR036282 -
Chy10g00997 313 CDD GST_C_Tau 176 304 IPR045074 GO:0004364|GO:0006749
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g00997 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csin:114288181 285.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00997 Chy-Chr10:15434043 Chy12g01546 Chy-Chr12:19136634 1.67E-58 dispersed
Chy06g00242 Chy-Chr6:1613829 Chy10g00997 Chy-Chr10:15434043 8.80E-08 transposed
Chy10g00997 Chy-Chr10:15434043 Chy12g01545 Chy-Chr12:19134693 2.69E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g910 . . . . . . . . . . . . . . . Cpe09g00176 . . . . . . . . . . . . . . . . . . . . . Chy10g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g00997 Chy_Chr10 FPKM 7.077101 8.105988 9.785275 10.594089 8.848834 9.683842 8.606967 25.532228 24.209444 24.86363