Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01005 ATGGCAATCTCCTGTATTCCAACTTGCCAATTCACTCTCACAAAACCAAGCTCCGCCTTTTCCAAGAATGAGTTCGTAATAAATCAACTCAACCCTCTTTCTCTTTTGTCCAAATGTACATCTCTCAACCAGCTCAAGCAAATTCAAGCATATACCATTAAAACCAATCTTCAGAGTGATATCTCTGTTCTCACCAAGCTCATTAATTTCTGCACACTCAACCCGACAACTTCGTATATGGACCATGCCCACCATCTGTTTGATCAAATTCTTGACAAGGATATTGTTCTGTTTAACATAATGGCACGGGGTTATGCTCGCTCTAATTCTCCCTATCTTGCCTTTTCTCTTTTTGGTGAACTCTTGTGCTCTGGTCTTCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCGAGTTCTAAGGCCTTGAGAGAAGGTATGGGGTTGCATTGTTTTGCTGTTAAACTTGGACTGAATCATAATATTTACATATGCTCAACTCTCATAAATATGTATGCGGAGTGCAATGACATGAATGCTGCGCGTGGAGTGTTTGATGAAATGGAACAGCCATGTATAGTTAGCTATAATGCAATTATCACGGGTTATGCTCGAAGTAGTCAGCCCAATGAGGCTTTGTCGTTGTTTAGAGAATTGCAAGCGAGCAATATTGAGCCAACTGATGTAACTATGCTTAGTGTAATTATGTCATGTGCTCTGTTGGGAGCACTAGACCTGGGAAAGTGGATTCATGAATATGTTAAGAAGAAAGGGTTTGATAAATATGTGAAGGTGAACACTGCACTTATAGATCTGTTTGCGAAATGTGGAAGTCTAACTGATGCTATTTCTATCTTTGAGGGCATGCGTGTGAGAGATACACAAGCTTGGTCTGCAATGATAGTTGCCTTTGCAACTCATGGGGATGGCTTGAAAGCAATCTCAATGTTTGAAGAGATGAAGAGGGAAGGAGTTAGACCTGATGAGATCACTTTTTTGGGGCTTTTGTATGCTTGTAGTCATGCTGGGCTAGTAGAACAAGGTCGAGGGTATTTCTATAGTATGTCTAAAACCTATGGGATAACTCCAGGGATCAAGCATTACGGTTGTATGGTGGATTTGCTTGGTCGAGCAGGTCATTTAGATGAGGCTTATAACTTTGTAGATAAACTGGAAATTAAGCCCACGCCTATACTCTGGCGGACCCTTTTATCTGCTTGCAGCACCCATGGTAATGTCGAAATGGCAAAGCGGGTTATTGAAAGAATTTTTGAATTAGATGACGCCCATGGAGGGGACTATGTTATATTATCAAACTTGTATGCTAGAGTAGGAAGATGGGAAGATGTGAATCATTGGAGGAAACTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCCGTGGAGGTAAACAATGTTGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTGCGTTTCGGTGGAGTTGCGACGAGCACTTGACGAGTTAATGAAAGAAATAAAGTTGGTGGGATATGTTCCGGATACATCTTTAGTATATCATGCTGATATGGAAGAGGAAGGGAAAGAACTTGTCCTAAGATATCACAGTGAAAAATTGGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACAATAAGGGTAGCTAAGAACCTCCGTATTTGTGGAGATTGTCATAATGCTGCAAAACTTATATCTTTTATTTTTGGGAGGAAAATCGTCATTAGGGACGTTCAACGATTCCATCGATTTGAAGATGGGAAATGCTCCTGTGGTGATTTCTGGTAA 1815 41.49 MAISCIPTCQFTLTKPSSAFSKNEFVINQLNPLSLLSKCTSLNQLKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIVLFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICSTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDLFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKPTPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHWRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15465211 15467025 + Chy10G181990.1 Chy10g01005 235380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01005 604 Pfam PPR repeat family 194 241 IPR002885 -
Chy10g01005 604 Pfam PPR repeat family 296 342 IPR002885 -
Chy10g01005 604 Pfam PPR repeat family 93 141 IPR002885 -
Chy10g01005 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Chy10g01005 604 TIGRFAM PPR: pentatricopeptide repeat domain 299 332 IPR002885 -
Chy10g01005 604 TIGRFAM PPR: pentatricopeptide repeat domain 166 192 IPR002885 -
Chy10g01005 604 TIGRFAM PPR: pentatricopeptide repeat domain 96 129 IPR002885 -
Chy10g01005 604 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Chy10g01005 604 Pfam DYW family of nucleic acid deaminases 511 604 IPR032867 GO:0008270
Chy10g01005 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Chy10g01005 604 PANTHER BNAA02G26650D PROTEIN 25 590 - -
Chy10g01005 604 Gene3D Tetratricopeptide repeat domain 248 362 IPR011990 GO:0005515
Chy10g01005 604 Gene3D Tetratricopeptide repeat domain 363 530 IPR011990 GO:0005515
Chy10g01005 604 Pfam PPR repeat 270 295 IPR002885 -
Chy10g01005 604 Pfam PPR repeat 371 394 IPR002885 -
Chy10g01005 604 Pfam PPR repeat 167 192 IPR002885 -
Chy10g01005 604 Gene3D Tetratricopeptide repeat domain 153 247 IPR011990 GO:0005515
Chy10g01005 604 Gene3D Tetratricopeptide repeat domain 14 152 IPR011990 GO:0005515
Chy10g01005 604 Pfam E motif 413 475 IPR046848 -
Chy10g01005 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Chy10g01005 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01005 - - - csv:116404120 1209.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01005 Chy-Chr10:15465211 Chy02g01976 Chy-Chr2:23518489 0 dispersed
Chy01g00461 Chy-Chr1:3333911 Chy10g01005 Chy-Chr10:15465211 2.20E-06 transposed
Chy01g00727 Chy-Chr1:5302455 Chy10g01005 Chy-Chr10:15465211 6.77E-121 transposed
Chy01g01671 Chy-Chr1:22635560 Chy10g01005 Chy-Chr10:15465211 6.83E-102 transposed
Chy02g00107 Chy-Chr2:765729 Chy10g01005 Chy-Chr10:15465211 2.63E-164 transposed
Chy02g01131 Chy-Chr2:8009480 Chy10g01005 Chy-Chr10:15465211 1.33E-89 transposed
Chy02g02488 Chy-Chr2:28407265 Chy10g01005 Chy-Chr10:15465211 1.07E-115 transposed
Chy03g00468 Chy-Chr3:6580494 Chy10g01005 Chy-Chr10:15465211 1.03E-157 transposed
Chy03g01128 Chy-Chr3:14548045 Chy10g01005 Chy-Chr10:15465211 1.80E-179 transposed
Chy04g01740 Chy-Chr4:23777350 Chy10g01005 Chy-Chr10:15465211 8.50E-163 transposed
Chy05g00790 Chy-Chr5:11266585 Chy10g01005 Chy-Chr10:15465211 3.99E-145 transposed
Chy06g00433 Chy-Chr6:2924481 Chy10g01005 Chy-Chr10:15465211 4.35E-119 transposed
Chy06g00572 Chy-Chr6:3905255 Chy10g01005 Chy-Chr10:15465211 7.34E-07 transposed
Chy08g00801 Chy-Chr8:15613809 Chy10g01005 Chy-Chr10:15465211 1.40E-30 transposed
Chy10g00649 Chy-Chr10:13017555 Chy10g01005 Chy-Chr10:15465211 2.28E-09 transposed
Chy11g01486 Chy-Chr11:21592246 Chy10g01005 Chy-Chr10:15465211 6.50E-137 transposed
Chy10g01005 Chy-Chr10:15465211 Chy02g02497 Chy-Chr2:28443249 1.14E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01005 Chy_Chr10 FPKM 8.189521 11.298731 5.361589 5.743326 9.192702 8.004817 8.870075 6.609809 7.154781 6.787208