Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01014 ATGGCTTCTGTCCTTATCTTTTTGGCTGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGGAGGTGGAGGCTGGACTGGGGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCCAGTGACCCCAAATGGTGCCTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCTAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTCGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGGATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGACATTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACTCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAATTGGCAGAGTAACAGCTACCTCAACGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGATGGCCGAACCGTCATCTCCAACAACGCCGTCCCAGCCGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGA 747 51.0 MASVLIFLAGFYAIVSSVDAYGGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15516342 15517304 - Chy10G182080.1 Chy10g01014 235389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01014 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Chy10g01014 248 Gene3D - 156 248 IPR036749 -
Chy10g01014 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Chy10g01014 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Chy10g01014 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Chy10g01014 248 PANTHER EXPANSIN 7 248 - -
Chy10g01014 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Chy10g01014 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Chy10g01014 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Chy10g01014 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Chy10g01014 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Chy10g01014 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Chy10g01014 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Chy10g01014 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Chy10g01014 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Chy10g01014 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Chy10g01014 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Chy10g01014 248 SMART dpbb_1 61 146 IPR007112 -
Chy10g01014 248 Gene3D - 13 152 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00538 Chy-Chr10:11972620 Chy10g01014 Chy-Chr10:15516342 7.11E-127 dispersed
Chy10g01014 Chy-Chr10:15516342 Chy11g01222 Chy-Chr11:18396907 1.46E-125 dispersed
Chy03g00226 Chy-Chr3:2111920 Chy10g01014 Chy-Chr10:15516342 3.31E-132 transposed
Chy03g01034 Chy-Chr3:13871209 Chy10g01014 Chy-Chr10:15516342 4.79E-122 transposed
Chy05g00682 Chy-Chr5:8773611 Chy10g01014 Chy-Chr10:15516342 5.02E-145 transposed
Chy06g01701 Chy-Chr6:19672998 Chy10g01014 Chy-Chr10:15516342 5.03E-82 transposed
Chy10g00315 Chy-Chr10:7887475 Chy10g01014 Chy-Chr10:15516342 3.67E-142 transposed
Chy10g01014 Chy-Chr10:15516342 Chy12g01532 Chy-Chr12:19055053 2.04E-104 wgd
Chy10g01014 Chy-Chr10:15516342 Chy02g02491 Chy-Chr2:28417130 3.93E-132 wgd
Chy10g01014 Chy-Chr10:15516342 Chy09g00238 Chy-Chr9:1968941 7.18E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01014 - - csv:101217956 512.686