Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01018 ATGATCCTTTACGCTTCTCCACCAAGTTCAGTCATCTTCTCCATAAGCAATGCTTCTCAACAAGCCAAACCCAGATCATCATCCTCCAACTGCGCGCACCAGAGCATTCCGGAAGCGCCACCGTTCCCACGTTTGTTTTGCCACAACCATTCTTGCCTATGCGGAAGAAGGCGTTTCATTGAAGCAGCAACAGCCACATCTCTGCTCCCTCTATGCCCTTCAATGGCTTCTTCTAATTCATCCTCTGATTACGCTGCTATTCTGAACAGGGTTCGTTCTCCTAAGCCAGATTGGTACGAGGATTTCTATGCGTCAGTTCTGGCTAATGGCATGAAGTCGTATGAAGAAGAGATTGCAGTTTACAAGTCCCAGATGTTTGCCAATTTGAGAGGGAAGTCTCAGAAAGTGTTGGAGATTGGAATTGGTGCAGGTCCCAACCTTAAGTATTACGCTGGGAATGAAGGTATGGAGGTTTATGGTGTGGATCCAAATCAAAAAATGGAAAAATATGCTCGGGAAGCAGCAAAAAACGCTGGTTTGCCACCTGAGGGTTTTGAGTTTAAACAAGCAGTTGGTGAGGCTATACCGTTGCCTGATGCTTCTGTCGATGCTGTTGTTGGAACACTTGTATTGTGTTCTGTGACCAATGTTGACATGACTCTAAGGGAGGTGAAGAGGGTTCTTAGGCCTGGTGGATTATACATATTTGTCGAACATGTCGCTGCAAAAGAAGGAACCGTGCTTCGATTTATACAGGACGTGCTTGATCCTCTACAACAAATTGTTGCTGATGGATGTCACCTTACTCGCCGGACAGGGCAGAATATAATTCAAACAGGGTTTTCAAATGTTGATCTGAACATAGCTTCCTTCTCTAACGCAGCCTTCATAAATCCTCAAGTCTATGGAGTTGCTTATAGATAA 924 44.91 MILYASPPSSVIFSISNASQQAKPRSSSSNCAHQSIPEAPPFPRLFCHNHSCLCGRRRFIEAATATSLLPLCPSMASSNSSSDYAAILNRVRSPKPDWYEDFYASVLANGMKSYEEEIAVYKSQMFANLRGKSQKVLEIGIGAGPNLKYYAGNEGMEVYGVDPNQKMEKYAREAAKNAGLPPEGFEFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDMTLREVKRVLRPGGLYIFVEHVAAKEGTVLRFIQDVLDPLQQIVADGCHLTRRTGQNIIQTGFSNVDLNIASFSNAAFINPQVYGVAYR* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15538929 15541348 - Chy10G182120.1 Chy10g01018 235393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01018 307 CDD AdoMet_MTases 135 237 - -
Chy10g01018 307 Gene3D Vaccinia Virus protein VP39 99 298 IPR029063 -
Chy10g01018 307 Pfam Methyltransferase domain 137 236 IPR013216 GO:0008168
Chy10g01018 307 PANTHER METHYLTRANSFERASE LIKE 7B 24 306 - -
Chy10g01018 307 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 98 288 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01018 - - - csv:101216778 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01017 Chy-Chr10:15535376 Chy10g01018 Chy-Chr10:15538929 1.52E-179 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g928 Blo01g00430 . Bda01g02150 . . . . . . Cmo18g01156 . Cma18g01136 . Car18g01048 Sed07g1943 . . Bhi07g01543 Tan04g1063 Cmetu10g0469 Lac13g0332 Hepe10g1758 . . . . . . . . . . . Cone6ag0575 . Lsi04g00404 Csa05g02470 Chy10g01018 Cme10g00401 . . . . . Bpe02g02337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009174 2 1 1 0 1 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 1 1 1 2 0 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01018 Chy_Chr10 FPKM 9.753985 11.18025 11.487231 11.381846 13.707115 13.489109 13.064351 28.907766 24.520769 24.929979