Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01025 ATGACGAGGGCTTTTAGAAGACGAACTTTGTATTCAAGGCCTATTGATCGCTTCCGATTCCGAGCATCGGCGGACGGTGCTACGAAATCTGGATTCATCAGAGGTATGAAGCTGAAGGAGATCTTGACTACTTTGTTTATTGGTCTTCCGTTGGTTGTTTTTGTTGTTTTGGTGTTTAGGAATTCAACGGTGGATCTTTTTCTGGGTTTTGCTGAAGCCAGAGCATTGGAAAGAGTGGCCAATAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACGGTTCCTCTCGACTTTCCAATGGAGACAAACTTATTGGAGGACTTCTAATTCCTGGATTTGATGAAGGATCATGCTTGAGTAGATATCAATCCAGTTTATATCGAAGAACTTCAACTCACAAACCTTCTTCTTACCTCCTCTCGATGCTTAGAGACTACGAAGCACTTCATCAACGGTGTGGCCCCCATACGAAACCATATGATGAAGCAGTAGAGCAACTTAGATCTGGTAATAGTGTTAGTTTGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTCCTCTATGCCCTCCTTACCAATCGTGTCTTGCTAGTCGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCCTTCCCAGAAAAATCTTGGTTGCTCCCAAATGACTTCCCCTTGGTGGATCAATTCAGCAACTTCGATTCAAAATCTCCTAACTGTCATGGAAATATGCTTAAGATGAACACTCTAAATACGTCAATAGAAGCAGTCCCATCCTATCTATACCTACATTTGGCTCATGATTATGATGATCATGACAAGTTGTTTTTCTGTGATCAAGAACAGGCTCTTTTAGGTAGGGTCCCGTGGCTTATACTGAAGACAGACAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCTTTCGAGCACAAATTGAGTAACTTATTCCCGCAAAAAGACACTGTCTTCCATCATCTAGGCCGTTATCTTTTTCACCCATCAAATCATGTTTGGGGTCTAATAACAAGATACTACGAAGCATATCTAGCAAGTGCAGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCAAGAGTGAACCGGGGCCATTCCAACATATAACCGATCAAATTTTAGGCTGTACTCTTAAGGAGAAGCTACTGCCTGAGGTAGACAAGGAAGGCTCCACCTCCGTGCCTCTGGAACGCCCAAGAGTGAAAGCTGTTTTGATGACATCTTTAAGTTCTGGATACTATGAACAATTGAGAACCTTGTACTGGGAATACCCGACTAAAACCGGAGATGTCATTACAGTTCATCAGCCAAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTTGAGTGATGTATTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGGCTCGGCGGATCAAAGCCATGGATTCTTTACAAGGCAGAGAACATGACCACGCCCAATCCACCATGTCGTAGGGCGATGTCAACGGAGCCTTGTTTTCATGCTCCTCCATTCTTTGACTGCAAAGCAAAGAAAGGAATAGATACCGGTGAAGTAGTTCCCCATGTAAGACATTGTGAAGACATGAGCTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.12 MTRAFRRRTLYSRPIDRFRFRASADGATKSGFIRGMKLKEILTTLFIGLPLVVFVVLVFRNSTVDLFLGFAEARALERVANNGGSESSGSENGSSRLSNGDKLIGGLLIPGFDEGSCLSRYQSSLYRRTSTHKPSSYLLSMLRDYEALHQRCGPHTKPYDEAVEQLRSGNSVSLTECKYVVWMSYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSNFDSKSPNCHGNMLKMNTLNTSIEAVPSYLYLHLAHDYDDHDKLFFCDQEQALLGRVPWLILKTDNYFVPSLFLIPSFEHKLSNLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLASADERIGIQVRVFKSEPGPFQHITDQILGCTLKEKLLPEVDKEGSTSVPLERPRVKAVLMTSLSSGYYEQLRTLYWEYPTKTGDVITVHQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPNPPCRRAMSTEPCFHAPPFFDCKAKKGIDTGEVVPHVRHCEDMSWGLKLVHHEDL* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15563589 15566016 - Chy10G182190.1 Chy10g01025 235400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01025 571 Pfam Xyloglucan fucosyltransferase 88 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Chy10g01025 571 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 6 570 - -
Chy10g01025 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 6 570 IPR004938 GO:0008107|GO:0016020|GO:0042546
Chy10g01025 571 Gene3D - 174 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01025 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101216541 1117.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01059 Chy-Chr7:15537493 Chy10g01025 Chy-Chr10:15563589 0 transposed
Chy10g01025 Chy-Chr10:15563589 Chy12g01529 Chy-Chr12:19032616 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01025 . 35 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.2e-154 543.5
Chy12g01529 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 8.5e-153 537.3
Chy10g01025 . 92 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.5 1.9e-162 569.3
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.7e-162 567.8
Chy10g01025 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 4.4e-137 485.0
Chy12g01529 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 1.3e-133 473.4
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 61.8 2.2e-182 635.6
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 2.5e-170 595.5
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 3.3e-200 694.9
Chy12g01529 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 5.3e-190 661.0
Chy07g01059 . 13 508 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 1.9e-147 519.6
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 4.8e-153 538.1
Chy12g01529 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.0 8.7e-147 517.3
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 5.9e-146 514.6
Chy12g01529 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 1.8e-142 503.1
Chy10g01025 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 52.8 1.1e-147 520.4
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 3.8e-145 511.9
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 3.5e-185 644.8
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT3G19280 58.0 7.4e-167 583.9
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 3.3e-200 694.9
Chy12g01529 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 5.3e-190 661.0
Chy07g01059 . 13 508 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 1.9e-147 519.6
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 52.8 1.1e-147 520.4
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 3.8e-145 511.9
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 5.9e-146 514.6
Chy12g01529 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 1.8e-142 503.1
Chy10g01025 . 35 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.2e-154 543.5
Chy12g01529 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 8.5e-153 537.3
Chy10g01025 . 92 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.5 1.9e-162 569.3
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.7e-162 567.8
Chy10g01025 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 4.4e-137 485.0
Chy12g01529 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 1.3e-133 473.4
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 4.8e-153 538.1
Chy12g01529 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.0 8.7e-147 517.3
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 3.5e-185 644.8
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT3G19280 58.0 7.4e-167 583.9
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 61.8 2.2e-182 635.6
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 2.5e-170 595.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01025 Chy_Chr10 FPKM 4.985043 5.230083 6.42473 6.616859 7.894518 8.983141 9.010945 8.454088 7.076895 8.243401