Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01039 ATGGGTGAGGATGATGAACAGCCGCCGCCGCCGCCGCCCTCGAAATCTAAGTCTTTTCCGTTGAGACCCACTATTAATCTGCCACCACGGACTTCTATGGAGTCCCTCTTCAGCAGTGGCCCGGGTTTGGGATTTGGGTTCAGCCCAGGTCCGATGACTCTTGTCTCCAGTTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCTCCGGTGACTGCCGTTCCTTCGTCGTCGTCTGAGTTTAAGGCTTCTCCCGGTCTGCTCGATTCTCCGGGGCTTCAAGGACCTTTTGGAATGACACATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGTAGAAGCCTATTCTCATAATCAAATGCAAGCCTCGTCCTTTTCTTCATCGGTAGCACCTTCTGCATCCTCCTTGCAGCTTTTGACATCCTTACCGGGAGAGAAGACTAAAGATCAGCTGATGCAACTTCCATTCCAAAACTCTTCAGTTGCGTCCAAGGAGATATCGGATAACTCTCAATCAGAGCAGAGATTGCAGTTGTCTTCGTGTAATGTTGATAGACCTGCTGATGACGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAAGGCAGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTTTGGAAGGACAAGTCACTGAAATTATCTACAAGGGTGAGCACAACCATAAACGGCCTCAACCAAATAAGCGAGCAAAGGATGTCGGAAATTCTAATGGATATTCAATTATTCATGGAAATCTTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGGACGAGGAGACATCTATCTCTTCCATTGGAAAGAAGGATCATGAATTAAGTCGTGTCACAAACGATCAGTTCTCGGGCAATAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAACCGAAAAGATGAAGATGAACCTGCTGCCAAGAGACGGAATATTGAGGTTAGAAATTCTGAGCCAGCATCTTCTCATAGAACTCTAACAGAATCCAGAATCATTGTGCAGACAACAAGTGAAGTTGATCTATTGGACGATGGTTACAGGTGGCGTAAGTACGGGCAGAAAATTGTTAAAGGAAACCCTTACCCCAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATCACGACATACGAGGGTAAACACAATCATGATGTTCCGCTTGGTAAAACCAGCAGCCACAGTTCAGTCAGCAGTAACATTTCTCAGCTAAAATCACAAAATATAGTTACTGAGAAAAAAAATTCAAGTAACAACACCGATCGTGGGAACTCTCGTCAACAGCCCAACGGACTCTTACGGTTGAAGGAAGAACAAATAACATAG 1476 45.19 MGEDDEQPPPPPPSKSKSFPLRPTINLPPRTSMESLFSSGPGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVTAVPSSSSEFKASPGLLDSPGLQGPFGMTHQQALAQVTMQAVEAYSHNQMQASSFSSSVAPSASSLQLLTSLPGEKTKDQLMQLPFQNSSVASKEISDNSQSEQRLQLSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQPNKRAKDVGNSNGYSIIHGNLELSSQVQSGYLNKLDEETSISSIGKKDHELSRVTNDQFSGNSDGEGGSEIETGVNRKDEDEPAAKRRNIEVRNSEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPLGKTSSHSSVSSNISQLKSQNIVTEKKNSSNNTDRGNSRQQPNGLLRLKEEQIT* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15648725 15651568 - Chy10G182330.1 Chy10g01039 235414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01039 491 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 17 490 - -
Chy10g01039 491 MobiDBLite consensus disorder prediction 430 491 - -
Chy10g01039 491 MobiDBLite consensus disorder prediction 1 33 - -
Chy10g01039 491 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 MobiDBLite consensus disorder prediction 1 18 - -
Chy10g01039 491 MobiDBLite consensus disorder prediction 312 326 - -
Chy10g01039 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 490 IPR044810 GO:0003700
Chy10g01039 491 MobiDBLite consensus disorder prediction 439 484 - -
Chy10g01039 491 MobiDBLite consensus disorder prediction 303 363 - -
Chy10g01039 491 ProSiteProfiles WRKY domain profile. 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 MobiDBLite consensus disorder prediction 328 352 - -
Chy10g01039 491 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 SUPERFAMILY WRKY DNA-binding domain 196 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 SMART WRKY_cls 377 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 SMART WRKY_cls 197 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 MobiDBLite consensus disorder prediction 249 268 - -
Chy10g01039 491 Gene3D WRKY domain 182 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 Gene3D WRKY domain 362 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy10g01039 491 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01930 Chy-Chr6:23221339 Chy10g01039 Chy-Chr10:15648725 1.12E-82 dispersed
Chy10g01039 Chy-Chr10:15648725 Chy11g01398 Chy-Chr11:20393355 1.25E-65 dispersed
Chy04g02099 Chy-Chr4:26376564 Chy10g01039 Chy-Chr10:15648725 3.56E-64 transposed
Chy04g02291 Chy-Chr4:27436313 Chy10g01039 Chy-Chr10:15648725 1.08E-14 transposed
Chy10g01039 Chy-Chr10:15648725 Chy09g00217 Chy-Chr9:1819693 1.01E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18618 PF03106 WRKY 8.40E-26 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01039 - - csv:101214453 901.738