Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01040 ATGGCGATTCCTGCAGATCCAAGGGCTTTTGCAACACTAAGTTCTTGTTATCCACGGCGTTCTCCGGCGTCCCTTCATCCTCGTAAGGCGGACCTCTCTAGTTTTGTTCATAGAAGATATGGAAATAAAGGAACAAGGCCAAAATGGCACACCATGTCCCATGAAAATGATAGCCTACATAGTATCTCCCTGGAAAATGTTGAGAGCTCAGAAAATTATGAACGATCATCAAAATCCTTAAGCCAAGAAAGCTTCATCCTCAGTTCCATGAACATGAACTTTTTGGAACGATTAATGTTGGCTTGGAGGATAATTTTTCCATCATCAGCACCTAAAATGGAATCTAATGCCACAATTGCCAAGCAGCGGTTAAAGATGATTCTCTTGTCAGATCGATGTGCAGTGAATGATGAAGCTAAACAAAAAATTGTGGACAACATCTTGAGTACACTTTCAGATTTTGTAGAAATAGATTCGGAAGATAAAGTTCAATTTAACGTCTCTACTGATTTGGATCTCAGAACAATTTACTCTGTAACGGTGCCGGTGCGAAGGGTGAAGGCTGAATATCAAGGCAGTGAGGAGGTTGGAGAAATGGCGAATACAGACTTGAAAGACGATGGAGAAGAATCTGGCTCTGCAGGTCTCATTTTCGATTCATTAGTTGCAGATGGAAAAGTATATTTTTTGTTCTTCGGACTATCGGATAGATTAGATTTCAGAAGTGAAATAGCATTTGAATTTTCTACTGATGAGAAGATTGTTCTCACCATCCTTTTCCAACGAGCCATGTCGGACGAGGAGCATCACTTCGAGTCCAAGGCCGACGCCGGAGCTTCCAAGACTTATCCCCAGCAGGCTGGAGCCATCCGCAAAAATGGATACATTGTCATCAAGGGCAGACCTTGCAAGGTTGTTGAGGTTTCAACCTCAAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGGCATTGACATTTTCACTGCTAAAAAGCTTGAAGATATCGTCCCATCTTCACACAATTGTGATGTTCCTCATGTCAGTCGTACTGACTACCAGCTCATTGATATCTCCGAGGATGGATTTATTAGCCTGCTGACAGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAACCGATGATGGTCTGCTGACCCAGATCAAGGATGGATTTGCTGAGGGGAAAGATCTGATTGTGACTGTCATGTCGTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATAGGCCCAAAATAG 1269 43.26 MAIPADPRAFATLSSCYPRRSPASLHPRKADLSSFVHRRYGNKGTRPKWHTMSHENDSLHSISLENVESSENYERSSKSLSQESFILSSMNMNFLERLMLAWRIIFPSSAPKMESNATIAKQRLKMILLSDRCAVNDEAKQKIVDNILSTLSDFVEIDSEDKVQFNVSTDLDLRTIYSVTVPVRRVKAEYQGSEEVGEMANTDLKDDGEESGSAGLIFDSLVADGKVYFLFFGLSDRLDFRSEIAFEFSTDEKIVLTILFQRAMSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPTDDGLLTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15654670 15659653 - Chy10G182340.1 Chy10g01040 235415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01040 422 SUPERFAMILY Translation proteins SH3-like domain 278 356 IPR008991 -
Chy10g01040 422 TIGRFAM eIF_5A: translation elongation factor IF5A 280 416 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy10g01040 422 Gene3D - 264 348 IPR014722 -
Chy10g01040 422 PANTHER BNAA07G09420D PROTEIN 264 419 - -
Chy10g01040 422 SUPERFAMILY Nucleic acid-binding proteins 349 419 IPR012340 -
Chy10g01040 422 CDD S1_eIF5A 349 419 - -
Chy10g01040 422 SMART eIF_5a_2 348 417 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy10g01040 422 Gene3D Cell division topological specificity factor MinE 103 183 IPR036707 GO:0032955|GO:0051301
Chy10g01040 422 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 264 419 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy10g01040 422 Pfam Septum formation topological specificity factor MinE 117 184 IPR005527 GO:0032955|GO:0051301
Chy10g01040 422 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 348 417 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy10g01040 422 Gene3D - 349 421 IPR012340 -
Chy10g01040 422 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 313 320 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02123 Chy-Chr2:25529601 Chy10g01040 Chy-Chr10:15654670 1.74E-103 dispersed
Chy07g00329 Chy-Chr7:2671510 Chy10g01040 Chy-Chr10:15654670 6.44E-68 dispersed
Chy09g00639 Chy-Chr9:8163092 Chy10g01040 Chy-Chr10:15654670 1.92E-67 dispersed
Chy10g01040 Chy-Chr10:15654670 Chy03g01084 Chy-Chr3:14216586 8.28E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01040 K03263 K02180 csv:101222451 437.187