Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01047 ATGAGATCAAGGCTTCTCTTGGCTGGAGAGTGGTGTATTCTTGGGTTGGTGATGATCCGTGTGGCGATGGTGATCTGCCTCCCTGGTCTGGGGGACTTCCACAATAACAAGTTGACTGGACCAATTCCTCCTCAGATTGGAAGGTTGAAGCGTCTTCAGATACTTAACTTGAGGTGGAATAAGCTGCAGGATGTCATACCTTCTGAAATAGGTGAACTCAAGAGTTTAACTCATTTATATTTGAGCTTCAATAATTTCAAGGGAGAAATTCCAAGGGAGCTTGCTAGTCTTCCAGAGCTTCGCTACCTACACCTACAACAAAATCGTTTCATTGGACGAATTCCTCCTGAATTGGGCACCCTGCAACATCTTCGCCACTTGGATGTGGGTAACAATCACTTGGTTGGCACCATTAGGGAACTTATACGCGTTGGTGGCTGCTTTCAATCTCTTCGCAACTTGTATCTTAATGATAATTATTTTACTGGGGGCGTTCCTGCTCAACTTGCAAATTTGTCGAACTTGGAAATCTTGTACCTATCACACAACAAGATGTCTGGAATAATTCCTGCTGAATTAGCCCGCATTCCAAGACTGACTTATTTGTTCTTGGACTACAACCAATTTAGTGGGAGAATCTCAGATGCATTTTACAAACATCCATTACTGAAAGAGATGTTCATCGACGGTAATGCTTTCCGGCAAGGTGTAAAGCCAATAGATACCCCTTCCATTCTCAAACCTTCTCTCATCATTCATCACCATCCTCACACTTCACTTCCCATGGCAACGATGACTTCCAAACCTCTCCTCCTCACTCTCCTCTGTTTCTTCACCATCTCCTCTGCTGAGTTCGTTACAGTTTCAGTCAAAGGTGTCACCACCATTGCTCAAACTGACGACGATTTTATCTGTGCTACTTTAGATTGGTGGCCTCCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCATTCCTAATTTGGATCTTCAGAATATTATCTTGGCCGAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGGTCACTTCAAGATCAAATCATTTACAGAGTTGGAAAGTCATATAAGAAGTGTCCTGAAATGAGGAAACAAAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTAACTATGCAACGATGGGATGAACTTAACGATTTGTTCAACAAAACATCAGCTCGTATTACATTTGGTTTAAATGCTTTAAAGGGTAAAAAACCAGCAAATGATGGAACTATCAATTGGGTTGGTGATTGGGATTCTCAAAATGCTCGTGATTTAATTCGTTACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTGGGGAACGAGCTTTCTGCTACTGGAGTTTCGGCTAGGCTCGAGCCAGACCAATATGGTAAAGACTTGACAGTAATGAGGAAAATAGTTGAAGAAGTGTATCCTGATCCCAACAACAGACCCAAAATCTTGGGACCAGCTGGGTTCTTTGACAAAGAATGGTTCAGAGTCTTTCTTCAAAACACTGCACCAAATGTTGTTGATGGAGTCACTCACCACATCTACAATCTTGGAGCAGGTGTTGATCCTACACTTATAGATAAGGTTCAAGACCCTTATTATTTGGACCAAATTGCTCAAACATTTAAGGAAGCCAAAGAAGTTTCAGAGAGTTTTGGCGCATGGTCTAAGCCTTGGATTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCTGATGGATTTTGGTATTTGGATAATTTGGGGATGACTGCATCATTTGATCATCAGGTTTATTGTAGACAAGCCTTGATTGGTGGAAATTATGCTTTGCTTAATACCACCACTTTCATCCCTAACCCAGATTACTATAGTGCTCTACTATGGCATAGATTAATGGGAAAGAAGGTCCTGGCAGCATCCCATGACAGTTCTCCATACCTTCGTGTTTATTCACATTGTACCAAAAACGACGAAGGTGTAACTGTTCTTCTAATCAACCTGTCAAATTCGACAACGCATGATGTGAAGATTGTAAACGACAGAAACATTTACCCAAATTTCGTAGGCAAGAAATTAAAAGCAAGAGAAGAGTATCATTTGACACCCAAAGATGGTGATATTCAAAGCGATATTATGCTTTTAAATGGAACTCCTCTTCAACTTACACCAATGTTGGAAATTCCCAAAATGAAGCCGAAGCTTGTCGATCCCACTTCCGCTGTATCGGTTGCCCCTCATTCTTACGTCTTCGTCTCCATCAAAGACTTCAAAGCTTCTGCTTGCGCCTAA 2337 41.55 MRSRLLLAGEWCILGLVMIRVAMVICLPGLGDFHNNKLTGPIPPQIGRLKRLQILNLRWNKLQDVIPSEIGELKSLTHLYLSFNNFKGEIPRELASLPELRYLHLQQNRFIGRIPPELGTLQHLRHLDVGNNHLVGTIRELIRVGGCFQSLRNLYLNDNYFTGGVPAQLANLSNLEILYLSHNKMSGIIPAELARIPRLTYLFLDYNQFSGRISDAFYKHPLLKEMFIDGNAFRQGVKPIDTPSILKPSLIIHHHPHTSLPMATMTSKPLLLTLLCFFTISSAEFVTVSVKGVTTIAQTDDDFICATLDWWPPNKCDYGQCPWGKAGIPNLDLQNIILAEAIKEFNPLRIRVGGSLQDQIIYRVGKSYKKCPEMRKQSDGLFGFSKGCLTMQRWDELNDLFNKTSARITFGLNALKGKKPANDGTINWVGDWDSQNARDLIRYTASKGYKIDSYELGNELSATGVSARLEPDQYGKDLTVMRKIVEEVYPDPNNRPKILGPAGFFDKEWFRVFLQNTAPNVVDGVTHHIYNLGAGVDPTLIDKVQDPYYLDQIAQTFKEAKEVSESFGAWSKPWIGESGGAYNSGGKTVSHTFADGFWYLDNLGMTASFDHQVYCRQALIGGNYALLNTTTFIPNPDYYSALLWHRLMGKKVLAASHDSSPYLRVYSHCTKNDEGVTVLLINLSNSTTHDVKIVNDRNIYPNFVGKKLKAREEYHLTPKDGDIQSDIMLLNGTPLQLTPMLEIPKMKPKLVDPTSAVSVAPHSYVFVSIKDFKASACA* 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15692996 15699845 - Chy10G182410.1 Chy10g01047 235422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01047 778 SUPERFAMILY L domain-like 33 235 - -
Chy10g01047 778 Gene3D Glycosidases 326 646 - -
Chy10g01047 778 Gene3D Ribonuclease Inhibitor 31 143 IPR032675 -
Chy10g01047 778 Gene3D Ribonuclease Inhibitor 144 250 IPR032675 -
Chy10g01047 778 SMART LRR_typ_2 97 121 IPR003591 -
Chy10g01047 778 SMART LRR_typ_2 49 73 IPR003591 -
Chy10g01047 778 SMART LRR_typ_2 172 195 IPR003591 -
Chy10g01047 778 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Chy10g01047 778 Pfam Leucine rich repeat 51 110 IPR001611 GO:0005515
Chy10g01047 778 PANTHER HEPARANASE-RELATED 275 778 - -
Chy10g01047 778 Pfam Glycosyl hydrolase family 79, N-terminal domain 286 604 IPR005199 GO:0016020|GO:0016798
Chy10g01047 778 SUPERFAMILY (Trans)glycosidases 299 648 IPR017853 -
Chy10g01047 778 PANTHER OS07G0598400 PROTEIN 275 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01047 K07964 HPSE; heparanase [EC:3.2.1.166] - csv:101214214 1057.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01272 Chy-Chr5:17033789 Chy10g01047 Chy-Chr10:15692996 5.99E-170 dispersed
Chy09g00557 Chy-Chr9:5971409 Chy10g01047 Chy-Chr10:15692996 2.35E-159 dispersed
Chy10g01047 Chy-Chr10:15692996 Chy02g00598 Chy-Chr2:3630906 3.54E-07 dispersed
Chy09g00673 Chy-Chr9:8792127 Chy10g01047 Chy-Chr10:15692996 5.98E-120 transposed
Chy10g01047 Chy-Chr10:15692996 Chy12g01517 Chy-Chr12:18962571 0 wgd
Chy10g01047 Chy-Chr10:15692996 Chy02g02463 Chy-Chr2:28212025 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g70 . . . . . Bpe10g00894 . Bma15g00136 Cmo04g01772 . . . . . Sed07g1998 . Cpe01g01496 Bhi07g01513 Tan04g1024 Cmetu10g0886 Lac13g0362 Hepe10g1783 . . Cla05g02405 Cam05g2582 Cec05g2614 Cco05g2654 Clacu05g2584 Cmu05g2438 Cre05g2555 . . . . Lsi04g00375 Csa05g02498 Chy10g01047 Cme10g00373 Blo06g00925 . . . . . . . . . . Cma04g01691 . Car04g01727 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005423 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 7 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01047 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0