Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy10g01049 | ATGTTTAGTTTCATGAAATCTCCCGCGAAAGTTACTAAGCAGAATTCTGTGGATCCTGAACTATCAACCGGATCTGGCACTAATCCTTTTGATTCAGATACTGGGCCTGATGCCAAACAAACTCTTAATGCCGCAAGAAGAACTTCTTCCGAGCCTGTGCTCCCTATGCCCAAGGCTAACCCTTTTGATGATGATGATGATAATGGTTTTGTTGGAAGAAAAGGGACAGCAACTTCTTCAGGCTCTAAGGATAGATACAAAAATGATTTTCGCGACTCCGGAGGACTTGAGAACCAGAGTGTGCAGGAATTGGAAAACTACGCTGTGTATAAAGCTGAGGAGACCACGAAATCTGTTAATAACTGCTTGAAGATCGCTGAGGATATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATAAGCAGGGTGAGCAAATTGAGAGGACCCATAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAGCTTCTGAATAATCTTGGTGGCATGTTCTCTAAGCCTTGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGAAAACTGAAAACAACAAGGAGCAAAGGGAAAAACTGGGTTTATCTACGGGCAAAAAACAGTCAGCTACTAGAACACCACCCTCTGAACCATCAGGCGCAATACAAAAAGTTGAGGTAGAGAAGGAAAAGCAAGATGATGCGCTCTCAGATTTAAGTAATATCTTGGGCGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTGGACAGGCAAAACAAAGCTCTGGATCATCTAAGCGGTGACGTTGACGAGCTGAACTCTAGAGTGAAAGGTGCCAATCAACGAGCTCGCCATTTGATCGGGAAGTAA | 909 | 44.11 | MFSFMKSPAKVTKQNSVDPELSTGSGTNPFDSDTGPDAKQTLNAARRTSSEPVLPMPKANPFDDDDDNGFVGRKGTATSSGSKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVNNCLKIAEDIREDATKTLDMLHKQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGKTENNKEQREKLGLSTGKKQSATRTPPSEPSGAIQKVEVEKEKQDDALSDLSNILGDLKSMAVDMGSELDRQNKALDHLSGDVDELNSRVKGANQRARHLIGK* | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 15703284 | 15704841 | - | Chy10G182430.1 | Chy10g01049 | 235424 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy10g01049 | 302 | SUPERFAMILY | SNARE fusion complex | 233 | 299 | - | - | |
| Chy10g01049 | 302 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 237 | 299 | IPR000727 | - | |
| Chy10g01049 | 302 | SUPERFAMILY | SNARE fusion complex | 99 | 170 | - | - | |
| Chy10g01049 | 302 | CDD | SNARE_Qc | 240 | 298 | - | - | |
| Chy10g01049 | 302 | MobiDBLite | consensus disorder prediction | 199 | 213 | - | - | |
| Chy10g01049 | 302 | PANTHER | SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED | 1 | 302 | - | - | |
| Chy10g01049 | 302 | SMART | tSNARE_6 | 104 | 171 | IPR000727 | - | |
| Chy10g01049 | 302 | SMART | tSNARE_6 | 232 | 299 | IPR000727 | - | |
| Chy10g01049 | 302 | Gene3D | - | 95 | 173 | - | - | |
| Chy10g01049 | 302 | Gene3D | - | 234 | 301 | - | - | |
| Chy10g01049 | 302 | MobiDBLite | consensus disorder prediction | 1 | 100 | - | - | |
| Chy10g01049 | 302 | PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | 1 | 302 | - | - | |
| Chy10g01049 | 302 | MobiDBLite | consensus disorder prediction | 214 | 229 | - | - | |
| Chy10g01049 | 302 | MobiDBLite | consensus disorder prediction | 8 | 48 | - | - | |
| Chy10g01049 | 302 | Coils | Coil | 268 | 295 | - | - | |
| Chy10g01049 | 302 | MobiDBLite | consensus disorder prediction | 172 | 244 | - | - | |
| Chy10g01049 | 302 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 106 | 170 | IPR044766 | GO:0005484|GO:0031201 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy10g01049 | Chy-Chr10:15703284 | Chy12g01513 | Chy-Chr12:18942756 | 4.70E-115 | wgd | |
| Chy10g01049 | Chy-Chr10:15703284 | Chy02g02459 | Chy-Chr2:28189904 | 1.35E-117 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy10g01049 | K18211 | - | csv:101213250 | 596.66 |