Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01049 ATGTTTAGTTTCATGAAATCTCCCGCGAAAGTTACTAAGCAGAATTCTGTGGATCCTGAACTATCAACCGGATCTGGCACTAATCCTTTTGATTCAGATACTGGGCCTGATGCCAAACAAACTCTTAATGCCGCAAGAAGAACTTCTTCCGAGCCTGTGCTCCCTATGCCCAAGGCTAACCCTTTTGATGATGATGATGATAATGGTTTTGTTGGAAGAAAAGGGACAGCAACTTCTTCAGGCTCTAAGGATAGATACAAAAATGATTTTCGCGACTCCGGAGGACTTGAGAACCAGAGTGTGCAGGAATTGGAAAACTACGCTGTGTATAAAGCTGAGGAGACCACGAAATCTGTTAATAACTGCTTGAAGATCGCTGAGGATATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATAAGCAGGGTGAGCAAATTGAGAGGACCCATAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAGCTTCTGAATAATCTTGGTGGCATGTTCTCTAAGCCTTGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGAAAACTGAAAACAACAAGGAGCAAAGGGAAAAACTGGGTTTATCTACGGGCAAAAAACAGTCAGCTACTAGAACACCACCCTCTGAACCATCAGGCGCAATACAAAAAGTTGAGGTAGAGAAGGAAAAGCAAGATGATGCGCTCTCAGATTTAAGTAATATCTTGGGCGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTGGACAGGCAAAACAAAGCTCTGGATCATCTAAGCGGTGACGTTGACGAGCTGAACTCTAGAGTGAAAGGTGCCAATCAACGAGCTCGCCATTTGATCGGGAAGTAA 909 44.11 MFSFMKSPAKVTKQNSVDPELSTGSGTNPFDSDTGPDAKQTLNAARRTSSEPVLPMPKANPFDDDDDNGFVGRKGTATSSGSKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVNNCLKIAEDIREDATKTLDMLHKQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGKTENNKEQREKLGLSTGKKQSATRTPPSEPSGAIQKVEVEKEKQDDALSDLSNILGDLKSMAVDMGSELDRQNKALDHLSGDVDELNSRVKGANQRARHLIGK* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15703284 15704841 - Chy10G182430.1 Chy10g01049 235424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01049 302 SUPERFAMILY SNARE fusion complex 233 299 - -
Chy10g01049 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 237 299 IPR000727 -
Chy10g01049 302 SUPERFAMILY SNARE fusion complex 99 170 - -
Chy10g01049 302 CDD SNARE_Qc 240 298 - -
Chy10g01049 302 MobiDBLite consensus disorder prediction 199 213 - -
Chy10g01049 302 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 302 - -
Chy10g01049 302 SMART tSNARE_6 104 171 IPR000727 -
Chy10g01049 302 SMART tSNARE_6 232 299 IPR000727 -
Chy10g01049 302 Gene3D - 95 173 - -
Chy10g01049 302 Gene3D - 234 301 - -
Chy10g01049 302 MobiDBLite consensus disorder prediction 1 100 - -
Chy10g01049 302 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 302 - -
Chy10g01049 302 MobiDBLite consensus disorder prediction 214 229 - -
Chy10g01049 302 MobiDBLite consensus disorder prediction 8 48 - -
Chy10g01049 302 Coils Coil 268 295 - -
Chy10g01049 302 MobiDBLite consensus disorder prediction 172 244 - -
Chy10g01049 302 CDD SNARE_SNAP25N_23N_29N_SEC9N 106 170 IPR044766 GO:0005484|GO:0031201
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01049 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101213250 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01049 Chy-Chr10:15703284 Chy12g01513 Chy-Chr12:18942756 4.70E-115 wgd
Chy10g01049 Chy-Chr10:15703284 Chy02g02459 Chy-Chr2:28189904 1.35E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01049 Chy_Chr10 FPKM 53.209183 52.346092 47.661129 43.78315 33.051956 32.626209 33.078865 111.179245 106.314911 100.524254