Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01058 ATGTGGAAGAGAGTTCTATGTTTAATTCCTCACAGGTCGTTTTCCTCTGTACCAGAAAACCCCCCATCTCTCTACTCCTTCCTCCAACCCTCCCTTTTTGCCCGAAAGAGAACTCCATTTTCTCCTTCTCAAGACTCCACCGACCTCCATCAGGATCCAACTCCTCAAAATTTAACTCCAGACCGTGTTGCCGTTGTAGAAACTGCCCTCCACAAGTCCCTCCTCACTAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGCTCTGCTTTCCCATCTAAGTCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGGGCCTTTGCTTCTGTGGTGTTTGTTATTGAGAAGAAACCTGAACTGTTGGATTTTGGGTCTGTTAAAGTTTTACTGGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATTAAATGCATGTTTAAGAATCGATGCTTCGTACCTTTTAGTGTCTGGGGCAAAGAACTTGTTGATATTTGCAGACAGAGTGGGAGTTTGATTCCCTTTTTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGGTTGGATTTTTTGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAGGGGTGTTGCCATGAGCTTGAATCAGTGACAGATGCCGAGAAAGTTGTTGAAACAATGTCACTTTTGTATATTCGGCCTAATGAGGTGAGTTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGTCTTGAACAGAAAATAATCGAGTTAGAGGTCTTGATAGGAAGTTTCGGTTTTACTTGTAAAGATCTCTTTTTTAGTAATTTGGTTAGTGGATACGTTAATGCGAGCAACTTTGCTGCTGTTTCGAAGACTATGCTGCGTAGTTTAAAGGATGAATGTGGTTCACAAGTGCATTTTGGTGAGAAAACATATTTGGAAATGGTCAAGGGCTTTATTCAAAGTGGAAATCTGAAGGACTTATCTGCATTAATTATTGATGCTCAGAATTTAGAGTCTTCATCAGCTGTTGATGGATCTATTGGATTCGGTATCATTAATGCATGTGTTAATATTGGATGGTTAGATAAGGCACAATACATTCTGGACGAAATGAATTCCCAGGGAGTTTCTCTGGGCCTTGGAGTCTATTTGCCAATCTTGAAAGCTTACCGGAAGGAGCATCGAACAGCTGCAGCCACCCAATTAATTATGGATATTAGCAGTTCTGGGATTCAGTTGGATGCAGAGAATTATGATGCTCTAATAGAGGCATCAATGTCGAACCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAACATGAGAGAAACAAGAAAATCTGACACGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTTTTAGATGAAATTGTCGAAGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATACCGAAGAATGAAATTTCTGCAGTTTGAACCAAACGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTCTAATGCTGTGGAACGAACTTAAGTGGAAGGTTACACCAAATGGGGAGAGTGGAATTAAACTTGACAACAACTTGGTTGAGGCATTTCTGTATGCTTTGGTCAAGGGAGGTTTCTTTGACGCCGTGATGCAAGTTGTTGAAAAAACTAAGGATACGAAGATCTTCATTGATAAGTGGAAATACAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACTACAGGAAAATGGAATCGCTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGCTTGA 1971 40.99 MWKRVLCLIPHRSFSSVPENPPSLYSFLQPSLFARKRTPFSPSQDSTDLHQDPTPQNLTPDRVAVVETALHKSLLTSDTDEAWKSFKLLTRSSAFPSKSLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKVLLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGKELVDICRQSGSLIPFLRVFEENCRIALDERLDFLKPDLIACNAALEGCCHELESVTDAEKVVETMSLLYIRPNEVSFGALAYLYALKGLEQKIIELEVLIGSFGFTCKDLFFSNLVSGYVNASNFAAVSKTMLRSLKDECGSQVHFGEKTYLEMVKGFIQSGNLKDLSALIIDAQNLESSSAVDGSIGFGIINACVNIGWLDKAQYILDEMNSQGVSLGLGVYLPILKAYRKEHRTAAATQLIMDISSSGIQLDAENYDALIEASMSNQDFQSAFALFRNMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEIVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTYRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTPNGESGIKLDNNLVEAFLYALVKGGFFDAVMQVVEKTKDTKIFIDKWKYKQAFMETHKKLKVAKLRRRNYRKMESLIAFKNWAGLNA* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15763689 15765659 + Chy10G182520.1 Chy10g01058 235433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01058 656 Gene3D Tetratricopeptide repeat domain 56 360 IPR011990 GO:0005515
Chy10g01058 656 Gene3D Tetratricopeptide repeat domain 493 570 IPR011990 GO:0005515
Chy10g01058 656 TIGRFAM PPR: pentatricopeptide repeat domain 506 538 IPR002885 -
Chy10g01058 656 Pfam PPR repeat 368 393 IPR002885 -
Chy10g01058 656 MobiDBLite consensus disorder prediction 39 58 - -
Chy10g01058 656 Pfam PPR repeat family 506 549 IPR002885 -
Chy10g01058 656 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Chy10g01058 656 Gene3D Tetratricopeptide repeat domain 364 468 IPR011990 GO:0005515
Chy10g01058 656 PANTHER OS01G0788900 PROTEIN 1 656 - -
Chy10g01058 656 Pfam Pentatricopeptide repeat domain 419 470 IPR002885 -
Chy10g01058 656 PANTHER BNAC05G43320D PROTEIN 1 656 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00039 Chy-Chr4:364055 Chy10g01058 Chy-Chr10:15763689 8.67E-37 dispersed
Chy10g01058 Chy-Chr10:15763689 Chy10g01234 Chy-Chr10:16971088 3.43E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01058 - - csv:101212045 1275.38