Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01059 ATGGCAGCGAGGGGTAGTCGGGAAAGAAGTTCACAAACGACAGGACAGCTGGGATTTGGGTCTGCATCGTCTATAGATTTGTTGGAAATATCAGATCTCGCTCAAGTTGGAGCAAATGTTAACCGACCGGAAGCAGACACGATTTGTTTGGCAAATCCTGGGCGTGGGATTTACCAGCTTCAGTTTAAAGATGATGATAGCGATGTTTCCAGCGATTGTTCTTCCAAATCAGAGAAGAGTTGCGGTTCTCAAGGTCCCACATCTGTATCCCAAGTGTCAGGTTTTACACATGATCAGTCCGGTGGAAATGTTTTGTCCCCAACTCAATCCCCTTCTCTTCAAACAATGGATCGTGCGGGAGGATATGGTGAATCATATGATCCGTTTAGAATCCCATCTGCAGTTTTCCAAAGAAGTAGTTCTGTTACTCCATTGGAATGGAGTATTGCTTCAAATGAGTCATTGTTTAGCATTCAGGTCGGAAACAATAGCTTCTCCAGAGATCATGTGTTGATGTTGAATGAGTTAGGTAAGTCGGGCGAGTTAACGAAATCTGGCAGGTTGACAAAAGCAGAAGATTCGTTTGTGTTTAGCTCACCACCTGCAGTTATCACGTCAAGAGAAGCTGAAATGAAGAGTGCTGAATATGAAGCGGATCCTAAAATGGCAGATACCATAGAATATAACATAAAGGATAAAAGTGGATTGATTACAGACGATGATCTTAGTGACAGAAACCTACCACCTCCTGCAGTATCATGGAATTCCTCTACCAAATCTCGGCACTCTGATAGAAGTCAAAGTAGCTCAGATTCATTCGCTTTCCCCATAGAGAAGAAATGCTCATGCTCATCGTGTTACCGTTCTAACTGTAGTCAGGCGTTCTGCTACTGTTTGTGGCCACGTTGCTACCCTACATGGTCAAATTGTTGTTGCTGGAACTGTAGCAGGACGTTCAGCTATTGTTGGAACTGTAGCCGAAGAGGTTGTCACATTCAGACCTCTAACATTTTGGCCGATGAAGAGGCGCAGGCTGGATCCATGCCTAATGATGCTAAATTTCAAGGCACTCCAGTCTCTTCAAAATCAAAAGCGAAGTGTGTTCGTATTCTTCTTGTTATAAGCGGAGTTGTTGTTCGTGTTCTTCTTGTTGCAAATGGAGATGTTCATGTTCTTCTTGTTTCAAGTGGAATTGCAGTTCGTGTTCTTGTTCCAAATGGAGTTGCAGTTCATGTTGTTCTTGTCCCAAATGGAGTTGCAGTTCATGTTCTTGTTCCAAATGGAGTTGCAGTTCATGTTCTTCTTGTTCTTTTTCCAAATGGAGTTGCAGTTCATGTTTTTCTTGTTCTTCTTGTTCCAAAAGGAGTTGCAGTTCATGTTTTTCTTGTTCCAAGTGGAGTTGTGGTTCGTGTTCTTCTTGTTGCAAATGGGATTCATGCACATGTTCATCTTGTTGGACATGCAGCTGCTGTAGTAATTGTCATTTTCGCGATTGTTGCCATTTTCGTCCTCGCCGTTGCTTTCGACCTCGTTGTCATATTTACCCTTCTTGTCATTTTTGCCGTTGTTAAATGGACGTCGTCCTAG 1587 42.91 MAARGSRERSSQTTGQLGFGSASSIDLLEISDLAQVGANVNRPEADTICLANPGRGIYQLQFKDDDSDVSSDCSSKSEKSCGSQGPTSVSQVSGFTHDQSGGNVLSPTQSPSLQTMDRAGGYGESYDPFRIPSAVFQRSSSVTPLEWSIASNESLFSIQVGNNSFSRDHVLMLNELGKSGELTKSGRLTKAEDSFVFSSPPAVITSREAEMKSAEYEADPKMADTIEYNIKDKSGLITDDDLSDRNLPPPAVSWNSSTKSRHSDRSQSSSDSFAFPIEKKCSCSSCYRSNCSQAFCYCLWPRCYPTWSNCCCWNCSRTFSYCWNCSRRGCHIQTSNILADEEAQAGSMPNDAKFQGTPVSSKSKAKCVRILLVISGVVVRVLLVANGDVHVLLVSSGIAVRVLVPNGVAVHVVLVPNGVAVHVLVPNGVAVHVLLVLFPNGVAVHVFLVLLVPKGVAVHVFLVPSGVVVRVLLVANGIHAHVHLVGHAAAVVIVIFAIVAIFVLAVAFDLVVIFTLLVIFAVVKWTSS* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15768191 15770522 + Chy10G182530.1 Chy10g01059 235434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01059 528 MobiDBLite consensus disorder prediction 239 271 - -
Chy10g01059 528 MobiDBLite consensus disorder prediction 68 112 - -
Chy10g01059 528 PANTHER - 21 317 - -
Chy10g01059 528 MobiDBLite consensus disorder prediction 74 112 - -
Chy10g01059 528 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 21 317 - -
Chy10g01059 528 MobiDBLite consensus disorder prediction 249 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01059 - - - cmo:103489558 605.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01059 Chy-Chr10:15768191 Chy02g02441 Chy-Chr2:28061270 2.97E-17 wgd
Chy10g01059 Chy-Chr10:15768191 Chy09g00199 Chy-Chr9:1706641 2.59E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g35 . . . . . Bpe10g00899 . Bma15g00132 Cmo04g01788 Cmo18g01125 . Cma18g01104 . Car18g01018 . Cpe09g00222 Cpe01g01506 Bhi07g01487 . . . . . . Cla05g02391 Cam05g2568 Cec05g2601 . . . Cre05g2539 . . . . . Csa05g02515 Chy10g01059 Cme10g00356 Blo06g00927 . . . . . . . . . . Cma04g01703 . Car04g01738 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009041 1 3 1 1 1 1 2 0 1 1 1 0 2 1 1 2 0 0 2 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01059 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0