Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01060 ATGGGGGAAGCAAACCAAGGAGGAAGTAGAGGAATGGAGAAAGTTTCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTATGTAGCAATTCACATCAGACCCAAATTGGGAGAGCCTTTAATGAAGAAGAAGAAGAAGGTACAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTTGGGGGTCGTTTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGGTCATCTTCCATAGCTGGTACCATGCTTTTGAGGGACGATGATGCTTCTACTCCTGCAGCTGTGTCGTACCCGGCGGCGATTATTCGGACCTCGTCTCTTCCGCCGGAGACAGAGGAGGAGTGGAGGAAAAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCCAAAAGGAGGCGGTTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGATGGGGACTAGTGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGTCTTACAGGATTGAATTTGAGAGAGAACAGGCATGGTTCCGGTATTTCGACGACGGTGGCACCGCCATTTGGGTTACCGACGTGGGCTGCTGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGATTGGCAAAGGCAAAGGTGGCTGCACATCCGGTGGCGGCGGTGGCACTAACGGCGGAGGTTTTCAGGGTGTCGGGCAGCCCGCCTCTCAGTGCTCTGCCGAATCACAGGGCGGAAGCTCATCGGGGATGTCGGAATTAGATAGCAAACAGATCCAAGGATCTAGCAGTTACGGTGAAGCGAGGAGCTCCTCACAAGAGCGAGGCAACCTAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGCCAGTTACAAAACAGAGACGAAAAATCAATCCAAGAAACCTGATTCAGACGAGAACAAGGGAAGGGAAGCGGGGATGATGTCGATGGAAGACATGCCTTGTGTGTTCACGATAGGGGACGGGCCAGATGGGAGAAGAGTGGAAGGAATTCTTTACAAGTATGGAAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGCCATGGGAAATTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCTTTTTTGTGA 1191 49.62 MGEANQGGSRGMEKVSLQTEKYPTDLLQRFLCSNSHQTQIGRAFNEEEEEGTEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDDASTPAAVSYPAAIIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGMGTSGCFEEERREIEGLTGLNLRENRHGSGISTTVAPPFGLPTWAAAARQALTGGIVDEIGKGKGGCTSGGGGGTNGGGFQGVGQPASQCSAESQGGSSSGMSELDSKQIQGSSSYGEARSSSQERGNLEAAGSSGSKMCENPSASYKTETKNQSKKPDSDENKGREAGMMSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPFL* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15771276 15774042 - Chy10G182540.1 Chy10g01060 235435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01060 396 Pfam Tify domain binding domain 354 388 IPR032308 -
Chy10g01060 396 Pfam Putative nuclear localisation signal 106 227 IPR032310 -
Chy10g01060 396 Pfam Ethylene-responsive binding factor-associated repression 51 84 IPR012463 -
Chy10g01060 396 PANTHER AFP HOMOLOG 2 19 392 IPR031307 GO:0007165
Chy10g01060 396 PANTHER NINJA-FAMILY PROTEIN AFP1 19 392 - -
Chy10g01060 396 MobiDBLite consensus disorder prediction 231 301 - -
Chy10g01060 396 MobiDBLite consensus disorder prediction 227 320 - -
Chy10g01060 396 MobiDBLite consensus disorder prediction 302 319 - -
Chy10g01060 396 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00824 Chy-Chr4:10731616 Chy10g01060 Chy-Chr10:15771276 2.64E-21 transposed
Chy10g01060 Chy-Chr10:15771276 Chy12g01496 Chy-Chr12:18810214 1.95E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01060 - - csv:101220339 711.064