Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01080 ATGACGACAAAGCCAATGATGTCTTCAGCTGAAGTTGTCTTAGCTTCCATCTCAGAAATCATTGATTCCACAGCGTGCACTGAAGAAGAACATGGAGAATTTATTGAGATTGGAAGCTACTTTTATCGAGCAGCTTTGGCTGTTGAGGAGTTGCAGGCAATAGACCCCATAAAATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAACCTTGCGAAGTATCTTCTGGAAAAGTTCCTAACCAGCATTCAACTAGTCTCAAATTCTGATCCCATTAGCATCATAAATCCACTAGAAGAGGTGATAAAACAGATGGGTGCATGCTTGAACAAGATAGCAACCGCTACATTCAAGGAACAAAATTATGTGAAAGTGGCAATTTTATCACTTTCAGATGAAATGAAAAATATATCCACTAAAATTGACCAAGCTCAAGCCATAATGAACATGCAAGAGATTCAAACTTCTTTGGAGAAACAGTGGGAAAAAGTACCAGAAGTTATAGAAAAAGATCTATACCCCATTGACATGGACTGGGACACAAGCACAACCAATACACAATCTCCAGTTGCATTAGAGTTGAGTGATGCTGTTATTATTAGAAAGGGTGGAAGAAGCCAAATGAAGTATAGAAATGCTACATCAGACGTGGAAAAACTACCCTCAAAGACCCATTACACAAAACCTCTCTTTGAAACCTTCATCTGTCCATTGACAAAGAACATAATGGAAGATCCAGTTACCTTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGTTTCAAGAGTTTAAAGAATTTGAGGAAACTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAATGGAGCTCTGAAGTCTAAAATAGACAAATGGAATGAACGCAATGAGACACCAACAATTGAAGTCACCCGGGATGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGAGCATCAGCAAAGAGAAGCAGTTCAACATAGAACAGATCTTCGATTTTGACATGTTACAGTTGCTCGTTGACTTTCTGGAGTACAGAGACAGAGATGTTAGATATGCAGTTCTACAGCTATTGCATCAAATGGTAGAAGTCAATGAAGACAACAAGATAATGATCTGTAACCAATTGAACATGTCAAGAATAATCAATCAACTATCAAGTAGTCACAGGTCCATTCGAGATACAGCATTGCTTCTGTTGTTTGAGCTTTCAAGATCCCAGTCATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTTCAGGGCTGATCAGCATGAAGGACAACAGGTTAGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAATTTAGAGAAATTTCCAACGAATATCAAGCTTATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATCAGACATGATTGTATGGCGTATGTAGCTGAGAGGGCCTCTCCAGTTCTTGTCAAGATGGTGCATGAAGGAGGTACATTTACCCGCAAGGCAGCCCTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATTGTAGAACATTAGCAGAAGCTGGAGCTGTAAAAGTCATGGCTGAAGAGATGTTCACTCGTACCATCTGTGATGAACTTAATGATCCAAAAGCAGAAGCGACTAAAATCCTGGCAAATATATGTGAATTCGGTCTTGACCTTGAGCCACTTCAAGTTAATGCTCAAGGCTACACTATGAGTTCAGAATATGTAGTCTACAACATTATCGAATTGCTCAAGAACTCAACTCCAGATGAATCTAAATTTAGCACGAGTCTCATCAGAATACTGTTATGCTTGACAAAATCTCCAAAATCAATGGACACCATTGTTTCAGGTGTAAAAAACACTGAAGCATGTGATACCCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTGGAGCTGCAGCAATAAAATTGCTCATATCACTGTCCGCTTACATGGGGTTCACAATGACAGAAAGACTCTGCAAAACCAGTGACCAAGTGGCGAATCTTATCAGCAGCATTGCCTTGACAAACCAAATCAAAGAGAAGCAGACACTTTCAGCAACATTCTTAGCAAAACTCCCTCACGAGAGTCTGGCTCTCAACACCATTCTGGTAAACAAGAACACCGTCCCCAAGCTCCTGCAAACAATCAATCATATACAAAGCAATGGAACAGGAATGAGCAGGTATGCAAGTGCTTTACTTGAGGGTTCAGTGGGAATTCTTGTCAGATTCACAGCAACAATTTATGACCCACAAATATTGTTTCTGGCAAAATTACACGATTTTACATCAGTGTTTGCTAACCTGCTAACCCAAACATCAAGCAATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGTATCTACAAGTCTATCCAAGCCCCTGAACATTAAAAACAAGGATATGAAATTTCTCCACTTACCCAAGCTTCTATCGCTAGGTCCATCACAGAAGGATCACTTACGAGTATGCCCAGTACATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCAAAGGCAATTGAAAAGCTATTGACATGTTTAGACAATGAGAACGAAGAGGTAGTTGAGGCAGCTTTGTCAGCCATTTGTACGCTTGTGGATGACAAAGTGGATATGGACAGAAGTGTGAGGCTGCTGAACGAATTTAACACAATAGGGCATGTCCTGAATGTGGTAGGAATCCATAAACAAGAATCTGTATTGCATAAATCATTTTGGTTGATGGAGAAGTTCTTGCTCAAGGGTGGGGAAGAATCACTTTCCAATATATCACAGGACAGATCGTTGCCTGCAATTTTGGCCACTGCTTCCCATCAAGGGAACAGCGAGACGAGGCGAATAGCAGAAAAAATATTGACCCATTTGAAAAAGGTACCAATTTTCTCAGCTCCTAATTATAGTCTATGA 3063 40.39 MTTKPMMSSAEVVLASISEIIDSTACTEEEHGEFIEIGSYFYRAALAVEELQAIDPIKFDEILQSLNKSINLAKYLLEKFLTSIQLVSNSDPISIINPLEEVIKQMGACLNKIATATFKEQNYVKVAILSLSDEMKNISTKIDQAQAIMNMQEIQTSLEKQWEKVPEVIEKDLYPIDMDWDTSTTNTQSPVALELSDAVIIRKGGRSQMKYRNATSDVEKLPSKTHYTKPLFETFICPLTKNIMEDPVTLETGVSYERQAIVEWFQEFKEFEETFCPVTGQKLVSKAFNSNGALKSKIDKWNERNETPTIEVTRDALSLASSDEMVLEAIKDLSSISKEKQFNIEQIFDFDMLQLLVDFLEYRDRDVRYAVLQLLHQMVEVNEDNKIMICNQLNMSRIINQLSSSHRSIRDTALLLLFELSRSQSLSDPIGSVTGGISGLISMKDNRLDEFASEKADETLRNLEKFPTNIKLMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCMAYVAERASPVLVKMVHEGGTFTRKAALKALLQISSHRPNCRTLAEAGAVKVMAEEMFTRTICDELNDPKAEATKILANICEFGLDLEPLQVNAQGYTMSSEYVVYNIIELLKNSTPDESKFSTSLIRILLCLTKSPKSMDTIVSGVKNTEACDTLIYFISSPDEELGAAAIKLLISLSAYMGFTMTERLCKTSDQVANLISSIALTNQIKEKQTLSATFLAKLPHESLALNTILVNKNTVPKLLQTINHIQSNGTGMSRYASALLEGSVGILVRFTATIYDPQILFLAKLHDFTSVFANLLTQTSSNEVQKLSAIGLEKLSSVSTSLSKPLNIKNKDMKFLHLPKLLSLGPSQKDHLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDDKVDMDRSVRLLNEFNTIGHVLNVVGIHKQESVLHKSFWLMEKFLLKGGEESLSNISQDRSLPAILATASHQGNSETRRIAEKILTHLKKVPIFSAPNYSL* 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15896281 15900752 + Chy10G182740.1 Chy10g01080 235455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01080 1020 SUPERFAMILY RING/U-box 226 309 - -
Chy10g01080 1020 Gene3D - 792 1012 IPR011989 -
Chy10g01080 1020 Gene3D - 509 689 IPR011989 -
Chy10g01080 1020 SUPERFAMILY ARM repeat 320 641 IPR016024 -
Chy10g01080 1020 Gene3D - 316 508 IPR011989 -
Chy10g01080 1020 SMART arm_5 340 380 IPR000225 GO:0005515
Chy10g01080 1020 SMART arm_5 382 422 IPR000225 GO:0005515
Chy10g01080 1020 SMART arm_5 466 506 IPR000225 GO:0005515
Chy10g01080 1020 SMART arm_5 879 919 IPR000225 GO:0005515
Chy10g01080 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 315 IPR013083 -
Chy10g01080 1020 SUPERFAMILY ARM repeat 582 1007 IPR016024 -
Chy10g01080 1020 Pfam U-box domain 233 306 IPR003613 GO:0004842|GO:0016567
Chy10g01080 1020 CDD RING-Ubox_PUB 235 281 IPR045210 -
Chy10g01080 1020 ProSiteProfiles U-box domain profile. 230 308 IPR003613 GO:0004842|GO:0016567
Chy10g01080 1020 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1018 - -
Chy10g01080 1020 SMART Ubox_2 234 301 IPR003613 GO:0004842|GO:0016567
Chy10g01080 1020 Pfam Armadillo/beta-catenin-like repeat 879 917 IPR000225 GO:0005515
Chy10g01080 1020 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 5 1018 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01080 - - - csv:101217719 1880.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00609 Chy-Chr3:8656921 Chy10g01080 Chy-Chr10:15896281 2.28E-121 dispersed
Chy10g00241 Chy-Chr10:6132869 Chy10g01080 Chy-Chr10:15896281 3.14E-34 dispersed
Chy10g01080 Chy-Chr10:15896281 Chy11g00773 Chy-Chr11:10806676 2.89E-15 dispersed
Chy10g01080 Chy-Chr10:15896281 Chy12g00185 Chy-Chr12:2245357 2.39E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01080 Chy_Chr10 FPKM 17.230154 17.412928 16.026562 16.132616 17.411736 24.692148 19.663702 25.597815 28.173952 26.25308