Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01108 ATGGCTTCCGAGAGTGCTTCCAGATCCAGTTCAGCAGCCGATTCATATATTGGAAGCTTGATTAGCTTAACTTCCAAGAGTGAGATTAGATATGAAGGTGTTCTTTACAATATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAGTCCCACCAAGTGACAAAGTGTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAGGTAAAATCTTCTCCACCTGTTCAGACTACATCCTTGATAAACAACGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTTAGTGGGCTTGTGCCTGATATTAATTCTCAGGCCATGCCAATGGGAATGCCTGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCAACCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTACGCCACCTCCACCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCGGTAATGGACTTCCTCACATGCATCAGCAATCGTTACTTCGCCCTCCACCTGGCCTGTCATTTCCTTCTTCCTTGCAGCAGCCACTGCAATATCCTAATCTTAATGCTTCTTTACCAACTGGTGCACCAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTTTATCTTCCACAGCATTGCCACAAGTAACTGTATCTTCGACACTTCCATCCGTGCTCTCAGCTCCACAGACCTCTGAGATTTCATCAAGCTCAGTGGCTAACAAGACAGTACTTCCTGAAGCTCCTCTTAGTACCAACTTGCCATCACTCTCTCCCTTGACGGCGAGTTCAGATGTCAGTCCTGTTATGCCTCCAATTACCAACAAAACTACTACAGTTTCTGGTCCAGCACTGTCTTATCAAACTATCTCTCAATCTACTTCCTCTGTTGCTGGAACATCAAACTCTGTTCTCACAGGTGTTCCTGCACCTACCCTTGTGACTCCTGGCCAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGCAAACAGTTCAAAAGGACGTTGAAGTGGTTCAAACATCTTCCTCATTAGCAGCAGAACATACTGTTCCAGCAGCAGATACTCAGCCACCATTATTACCATTACCGGTGTCTTCACGAGCTATGCATAAGCCAAATGGTTCAACTTCACAAACTCGGTACATCTACAGGGGACGTGGTAGAGGAAGACGATCTGGGAACTCACATCAAACAGAAAGATTTACGGAAGATTTTGACTTCATGGCAATGAATGAGAAATTTAACAAGGATGAAGTTTGGGGTCATCTTGGTAAGAATACCAAATCTCATCAAAAGTACACCGATGGAGATGAAAAGTTTAGTGATGAAGAGGATGTCTATGAAGAAGATGATGGTGAATCGTCAAACTTAGAGATCAAGCCTGTGTACAATAAAGATGACTTTTTTGATACTCTCTCGTGCAACAATGCTGACAATGATGCTCAAAATGGAAGGAGGACAAGATACTTCGAACAAGTCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGTTATGCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACGGGAGAGGATATGGCCACTCTGGAAGGAGTCGAGGGCGGGGAATGCATAACTATAATCCTTCCCCAGATAAATTTCCAGGTTTGGTTTTCATTTTCAAACGCAATTCCATTCCGTGTACTCGACAGCAGAGGCACAGCCATAAATTGAAGTCCGCCCATAGTTTCATTGTCGGCAGTTTTCATAGCCTGCCTACCACTGTACTCTTGGCTGAGCCTAAATCATTGAGCTGCAGGCCGCCTTTCTCTGTCCCCATGGCTGCAGCATTGCCCTCACTGACCCCATTACTCATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTCCTGGTCTTCGTTTGGGCTTTTGTATTCAGTTCCAGCTTCGGCCATCCCCCTTCCCGTGAAGATCATCTCTTCGATGTTCTGCATCCTTTGTTCATGATAATTGGTCTCGTTCTCCTCAGTGGAGAAGCAATTTCGGTTCATAGTTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTAAGTCTTCAAGGGCTAGCTTTGGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGTTGGGTTTGGTTGTCATCACTCTGTTTGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTTGTTGGTTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACGGGGCTTCTTGAGAAGTTGACATTGTTGCAAACAAAGAGAAATGTACCTAGGAAGGGTCCTGAAGCCATGGTTGTGAACAGTCTAGGCTTGTCACTGGCTCTGCTTACTGGAACGGTGATGCTCATTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACCATTTTTCTCTAATTCAAAGCCCTTATCTTCTTAA 2688 45.24 MASESASRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSSSLPPPVSGLVPDINSQAMPMGMPGSNFQGGLPLYQPGGNVGSWGASTPPPPNPSGGGLALPMYWQGYYGPGNGLPHMHQQSLLRPPPGLSFPSSLQQPLQYPNLNASLPTGAPNLLEVPSSLFSANPTTPSLSSTALPQVTVSSTLPSVLSAPQTSEISSSSVANKTVLPEAPLSTNLPSLSPLTASSDVSPVMPPITNKTTTVSGPALSYQTISQSTSSVAGTSNSVLTGVPAPTLVTPGQLLQTTVASSSLQTVQKDVEVVQTSSSLAAEHTVPAADTQPPLLPLPVSSRAMHKPNGSTSQTRYIYRGRGRGRRSGNSHQTERFTEDFDFMAMNEKFNKDEVWGHLGKNTKSHQKYTDGDEKFSDEEDVYEEDDGESSNLEIKPVYNKDDFFDTLSCNNADNDAQNGRRTRYFEQVKLDTETFGEFARFRGGRGGYASGRGGRRGGYYGRGYGHSGRSRGRGMHNYNPSPDKFPGLVFIFKRNSIPCTRQQRHSHKLKSAHSFIVGSFHSLPTTVLLAEPKSLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLVFVWAFVFSSSFGHPPSREDHLFDVLHPLFMIIGLVLLSGEAISVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWLGLVVITLFGAQWMMGFLSFWHWREVRATRERVLPWHVFVGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLSLALLTGTVMLIAISPKYPPSLPTTKQQPFFSNSKPLSS* 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16116762 16124923 + Chy10G183020.1 Chy10g01108 235483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01108 895 CDD LSm14_N 16 87 IPR025609 -
Chy10g01108 895 CDD Cyt_b561_ACYB-1_like 697 836 - -
Chy10g01108 895 Pfam FDF domain 443 545 IPR019050 -
Chy10g01108 895 Gene3D - 654 875 - -
Chy10g01108 895 Gene3D - 7 92 - -
Chy10g01108 895 SMART 561_7 703 828 IPR006593 -
Chy10g01108 895 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Chy10g01108 895 ProSiteProfiles DFDF domain profile. 436 472 IPR025762 -
Chy10g01108 895 ProSiteProfiles FFD box profile. 504 519 IPR025761 -
Chy10g01108 895 PANTHER PROTEIN DECAPPING 5-LIKE 5 581 - -
Chy10g01108 895 PANTHER SCD6 PROTEIN-RELATED 5 581 - -
Chy10g01108 895 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Chy10g01108 895 SMART LSM14_2 10 110 IPR025609 -
Chy10g01108 895 MobiDBLite consensus disorder prediction 469 498 - -
Chy10g01108 895 ProSiteProfiles Cytochrome b561 domain profile. 666 870 IPR006593 -
Chy10g01108 895 Pfam Eukaryotic cytochrome b561 703 833 IPR006593 -
Chy10g01108 895 SMART FDF_2 442 547 IPR019050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00019 Chy-Chr4:196033 Chy10g01108 Chy-Chr10:16116762 3.79E-41 dispersed
Chy10g01108 Chy-Chr10:16116762 Chy09g00902 Chy-Chr9:11812174 0 wgd
Chy10g01108 Chy-Chr10:16116762 Chy09g00143 Chy-Chr9:1221580 1.20E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01108 K18749 - csv:101205721 1026.93