Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01109 ATGTGCTCTTCTTCTTCCTTTCCGTCTACCTTCTCTTTATTCCTTACCAAGTCCCCGTCCATTTCCCGACCACGGACTCTTCTTTTCCCCAACTCCCATCTATTCCTCCCCCATCTCAGGCCCACTAACTCTACATTTCGTATTGCTGCTTCTATTACTGAACCAGACCTCCACCTTTCGTCTTGGTCTAATTCCGACCAACCCAACACCGGCGACGCCTATGGTGGCTGGGTATTTCTCAACACTCCAACCACTGATGCGAACACTGAGAAACGAGGGTTGTCTCGTTTCGTAATTGGGGTGGTTGGGGCCTCGCTTGTTGTTTTGTTCGCTGTTATTGCTCAAATTTCACTATCTAGAAGAGGGTTTAAGTTTCAGTGGCGTATTCCCTTGAGATCATTAGAAGGGATATTTAGTCATGCGGAAAATGTAGGCGATCAAGGCAAACCTGTGGAGGATAGTTTAACTAATGACGATCTACGGACTGAATCTGGTGCTGAGTCAATAACTGATTCTAAGATTGATGACGCTATTACTTCAGATTCTGGGAATAAGCTTGAACGAGTTATAATCACCATTCCCGTCGATTCTACTCAAGATGAAGCTTTATCGGTTTTGAAGAAACTTAAGGTTATTGAAGAAGATATTAATGCTGGAGAGTTGTGTAGTAGAAGGGAATATGCTAGGTGGCTAGTTCATATGTATTCGTCATTGGAAAGGAATCCGAAACACCATATTATTCCATCTGTTTCGCTTTCTGGGTCAACAATTGCTGCTTTTGATGATATAAGTTTTGAAGATCCTGATTTTGAGTCCATTCAAGCTCTAGCAGAAGCTGGTGTCGTACCCAGCAAGTTATCACCAAACTATGGATATGATGGCTTGGGAGATCAAGAGAGAATTTATTTTTTTCCTGAGAGGTTTGTATCTCGCCAGACTTTGATAGACTGGAAAGTCCAGTTAGATTATGAGTTTGTTCCTGGAATGCTAGAACGGATATCAAGTGCAAAGGTAGATTTTATGGACTTGAAGGAAATCAGTTCAGAAGCATCACCACAACTATTCGTGGATATTTTAGCTGGGGAGAGAAGCATTCTCAGAAAAGTTTTTGGTCGAATCAAACGGTTTCAACCAAACAAACCTGCAACAAAAGCACAAGTAGCAGTCACACTGGCAAGTGGCAGGATGGCAGAAGCAATTGCTGCTGAATTATCAAGACTGGAATCCGAGAGTTCTGCTAGAAAGGCTGAGATAGAAGATATCAAGTTGGAATTGGTAGAAAGAGGAGACATACAAAGGTATTGGGATAAGAAGCTAACTGAGGAGAAAAAACGCCTTTTAGATGTGGAGGAACTTTATCTTGCTGCTATCAGTAATTTGGGAGAGGAGAAAATGGTTCAAGAGAAGAGTTTTTCCGAGTATTTAAAGGAGAAGGCATCTATAGACTGTCAGAGGCAATTGCTTCTCAGCCTCAAGGAAGAAGTTGATGGGATGACAGAAAAGATTCTTTCTGAGAGATCTGTATGTGAGACAGAGCAGAATGAGCTACAGAATATGCACACCGATTTACAGAACCAGCTAGAGGGGATGCTTGATACAAAATCTGTTCTTGAAGCTGAGAAAGAAGCTCTCCGTATTCTTAGAACTTGGGTAGAAGACGAAGCAAGGAAAAGCCAAGCTCGTGCTAAGGTTCTTGAGGAGGTCGGACGGAGATATAGACATTACTTGGATAAGAAAGGGAGTTCACCGGCCGGAAGTTTTCCTTCAAATTTAACAGTGACTGAGAGGCTCCAATGGTTTGAGATGATAGTCATGGAGGTGGGAAGGAATGGACAATACAGTTTTGAAGAATTGGTTTATCTCAAATGGGAAGTTGAAATGCTAGGGCTTGTGGTTGCTGCTTCAATTGCAGCCTATGCAGTAAGGCAGCTCAATGTTAAAAACTCAAACTCCGTCGCCTCCGTCAACAAGCGCACCGAAAATGGTGAAGAGAAGGAGGAGGTTAAACATTCTAACAATGACTTCAAAGATGATTATGGGGAGGAAGAGGAGGAAGAAGAAGTCAAGTTAATTAGTAGCGTATTTGATCAAGTTCCTGTTTATATAACTGAAGATGACGACATTTTACCTGAATTTGAAAACCTTCTATCCGGGGAGATTGAATTTCCATTACCTGAAATTGATGACAGTAAAGCTGAGAAGGATAGAGTATATGAAACTGAGATGGCAAATAATGCAAGTGAACTGGAGCGATTGCGCAACTTAGTAAAGGAATTGGAGGAGAGGGAAGTAAAGCTTGAAGGTGAATTGCTTGAATATTATGGATTGAAAGAACAGGAATCTGACATTACAGAGTTACAGAGGCAGCTCAAGATTAAGGCTGTAGAGATTGATATGCTTAATATTACCATTAGCTCTTTGCAGGCTGAAAGGAAGAAGCTTCAAGAAGAGATTGCACAAGATGCTGCAGTGAAGAAGGAGTTGGAATTTGCAAGGAATAAGATCAAAGAGCTGCAGAGGCAGATTCAGCTTGATGCTAACCAAACAAAAGGCCAGCTATTATTACTCAAGCAACAAGTTTCTGGTTTACAGTCAAAGGAGCAAGAAACTATAAAGAAAGATGCTGAACTAGAAAAGAAGTTGAAAGCTGTGAAGGAATTGGAGGTTGAAGTTATGGAACTCAAGCGGAAGAACAAAGAGCTTCAAATTGAAAAGCGGGAGTTGACTATTAAACTGGATGCTGCTGAAAATAAAATCTCGACTCTGTCCAACATGACAGAAAGTGAGTTGGTAGCCCAGACTAGAGAGCAAGTCAGTAATTTAAGGCATGCAAATGAGGACTTAATAAAGCAAGTTGAAGGACTTCAGATGAATAGGTTCAGTGAGGTTGAAGAATTAGTATACCTTCGATGGGTGAATGCATGCTTAAGATATGAACTTCGCAATTACCAGGCTCCTACAGGAAAAATATCAGCTCGTGATCTCAGCAAGAATTTGAGCCCAAAATCGCAGGAGAAAGCTAAGCAACTCATGTTGGAGTATGCAGGATCGGAACGTGGACAAGGGGACACAGATCTTGAAAGCAACTACTCTCAACCGTCTTCTCCTGGAAGTGAGGATTTTGATAATGCTTCAATTGATAGTTCCTTTAGTAGATATAGTAGTCTCAGTAAGAAACCTAGCTTGATCCAGAAGTTGAAGAAATGGGGTGGTAGAAGCAAAGATGATTCTAGTGCTCTTTCATCACCTGCCAGATCCTTCTCTGGGGGTTCTCCTAGGATGAGCATGAGTCAAAAGCCGAGGGGTCCATTAGAATCGTTAATGCTTAGAAATGCAAGTGATAGTGTTGCAATCACCACTTTTGGTACGATGGAACAAGAACCTCTTGACTCTCCAGGCACTCCAAATCTCCCAAGTATCAGAACTCAAACTCCTAACGACTCCTTGAATTCAGTATCATCATCATTCCAACTAATGTCTAAATCCGTTGAAGGAGTATTAGATGAGAAATATCCAGCATACAAAGATCGACATAAGTTGGCATTAGCACGAGAGAAGCAACTTAAGGAAAGGGCAGACCAGGCGAGAGCAGAGAAGTTTGGCAATATTTCAAATTCGAACTTGAACTCTGAATTTAAAGGTAAAACTGAAAGAGACAGACCTGTAATGTTGCCTCCAAAACTTACTCAAATAAAGGAAAAACCAGTTGTACCTAGTGTTACTGCTGATGCATCTGGTGAAAATAAAACGACGGAGTCTCCAGCGATCAGCAGGATGAAGCTAGCAGAGATTGAGAAGCGACCTCCAAGGACACCTAAGCCACCACCAAGACCATCAGGAGGTGCTTCTGTAAGCACAAATCCCAATCCTCAGGGTGGTGTACCAGCTGCTCCACCTTTACCACCTCCACCTCCTGGTGCCCCACCACCTCCTCCAACTGGTGGACCACCTCGTCCACCTCCTCCTCCAGGAAGCTTGTCTAAAGGTGCAGGTGGTGATAAGGTTCATAGAGCTCCTGAGTTAGTTGAGTTCTATCAGACATTGATGAAACGAGAAGCAAAGAAGGATACTCCCTTACTTTCTTCTACGTCGTCTAATGTATCTGATGCTAGAAGTAACATGATTGGGGAGATTGAGAATAGGTCATCATTCCTCATAGCGGTAAAAGCAGATGTGGAAACCCAAGGTGATTTTGTCATGTCATTGGCAGCTGAAGTTCGAGCGGCTACATTCTCTAATATAGAGGATGTTGTGGCCTTCGTAAATTGGTTAGATGAAGAGCTATCATTCTTGGTTGATGAAAGGGCAGTCCTGAAGCATTTCGATTGGCCAGAAGGAAAAGCAGATGCATTGAGAGAGGCATCTTTTGAATACCAGGACCTTATGAAGTTGGAGAAGCGGATCACGACGTTTGTTGATGACCCTAAACTCTCATGTGAAGCAGCTTTAAAGAAAATGTACTCCTTGCTGGAGAAGGTTGAGCAGAGTGTTTATGCACTCCTGCGCACAAGAGACATGGCTATCTCACGATATAGAGAGTTCGGAATTCCAGTTGATTGGTTGTCTGATACAGGAGTTGTTGGAAAGATTAAGCTTTCATCTGTACAATTAGCAAGGAAATACATGAAGCGAGTAGCATCAGAACTTGATGCAATGAGTGAACCAGAGAAGGAGCCAAACAGAGAATTTTTGGTCTTGCAAGGGGTCCGATTTGCTTTCCGTGTTCATCAGTTTGCGGGAGGCTTCGATGCAGAGAGCATGAAAGCTTTTGAAGAGTTGAGGAGCCGAGTTCATACAACACAGATAGGAGATGATAATAAGCAAGAAGCCTGA 4833 42.42 MCSSSSFPSTFSLFLTKSPSISRPRTLLFPNSHLFLPHLRPTNSTFRIAASITEPDLHLSSWSNSDQPNTGDAYGGWVFLNTPTTDANTEKRGLSRFVIGVVGASLVVLFAVIAQISLSRRGFKFQWRIPLRSLEGIFSHAENVGDQGKPVEDSLTNDDLRTESGAESITDSKIDDAITSDSGNKLERVIITIPVDSTQDEALSVLKKLKVIEEDINAGELCSRREYARWLVHMYSSLERNPKHHIIPSVSLSGSTIAAFDDISFEDPDFESIQALAEAGVVPSKLSPNYGYDGLGDQERIYFFPERFVSRQTLIDWKVQLDYEFVPGMLERISSAKVDFMDLKEISSEASPQLFVDILAGERSILRKVFGRIKRFQPNKPATKAQVAVTLASGRMAEAIAAELSRLESESSARKAEIEDIKLELVERGDIQRYWDKKLTEEKKRLLDVEELYLAAISNLGEEKMVQEKSFSEYLKEKASIDCQRQLLLSLKEEVDGMTEKILSERSVCETEQNELQNMHTDLQNQLEGMLDTKSVLEAEKEALRILRTWVEDEARKSQARAKVLEEVGRRYRHYLDKKGSSPAGSFPSNLTVTERLQWFEMIVMEVGRNGQYSFEELVYLKWEVEMLGLVVAASIAAYAVRQLNVKNSNSVASVNKRTENGEEKEEVKHSNNDFKDDYGEEEEEEEVKLISSVFDQVPVYITEDDDILPEFENLLSGEIEFPLPEIDDSKAEKDRVYETEMANNASELERLRNLVKELEEREVKLEGELLEYYGLKEQESDITELQRQLKIKAVEIDMLNITISSLQAERKKLQEEIAQDAAVKKELEFARNKIKELQRQIQLDANQTKGQLLLLKQQVSGLQSKEQETIKKDAELEKKLKAVKELEVEVMELKRKNKELQIEKRELTIKLDAAENKISTLSNMTESELVAQTREQVSNLRHANEDLIKQVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQAPTGKISARDLSKNLSPKSQEKAKQLMLEYAGSERGQGDTDLESNYSQPSSPGSEDFDNASIDSSFSRYSSLSKKPSLIQKLKKWGGRSKDDSSALSSPARSFSGGSPRMSMSQKPRGPLESLMLRNASDSVAITTFGTMEQEPLDSPGTPNLPSIRTQTPNDSLNSVSSSFQLMSKSVEGVLDEKYPAYKDRHKLALAREKQLKERADQARAEKFGNISNSNLNSEFKGKTERDRPVMLPPKLTQIKEKPVVPSVTADASGENKTTESPAISRMKLAEIEKRPPRTPKPPPRPSGGASVSTNPNPQGGVPAAPPLPPPPPGAPPPPPTGGPPRPPPPPGSLSKGAGGDKVHRAPELVEFYQTLMKREAKKDTPLLSSTSSNVSDARSNMIGEIENRSSFLIAVKADVETQGDFVMSLAAEVRAATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASFEYQDLMKLEKRITTFVDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLSDTGVVGKIKLSSVQLARKYMKRVASELDAMSEPEKEPNREFLVLQGVRFAFRVHQFAGGFDAESMKAFEELRSRVHTTQIGDDNKQEA* 1611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16125883 16137697 + Chy10G183030.1 Chy10g01109 235484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1292 1326 - -
Chy10g01109 1610 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 627 1608 IPR040265 -
Chy10g01109 1610 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 627 1608 - -
Chy10g01109 1610 Coils Coil 1178 1198 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1018 1044 - -
Chy10g01109 1610 Coils Coil 776 848 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1067 1101 - -
Chy10g01109 1610 Coils Coil 877 925 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 658 677 - -
Chy10g01109 1610 Coils Coil 513 540 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 652 682 - -
Chy10g01109 1610 Coils Coil 742 769 - -
Chy10g01109 1610 Coils Coil 931 958 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1022 1044 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1075 1095 - -
Chy10g01109 1610 Coils Coil 404 424 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1186 1334 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 1125 1152 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 145 176 - -
Chy10g01109 1610 MobiDBLite consensus disorder prediction 152 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01109 - - - csv:101205484 1672.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01109 Chy-Chr10:16125883 Chy06g00955 Chy-Chr6:7021445 1.75E-62 dispersed
Chy01g02241 Chy-Chr1:26786814 Chy10g01109 Chy-Chr10:16125883 7.23E-67 transposed
Chy02g00058 Chy-Chr2:435778 Chy10g01109 Chy-Chr10:16125883 2.76E-34 transposed
Chy02g00236 Chy-Chr2:1573099 Chy10g01109 Chy-Chr10:16125883 5.52E-95 transposed
Chy06g00791 Chy-Chr6:5550057 Chy10g01109 Chy-Chr10:16125883 5.79E-70 transposed
Chy12g00314 Chy-Chr12:3389402 Chy10g01109 Chy-Chr10:16125883 2.25E-60 transposed
Chy12g00957 Chy-Chr12:14892541 Chy10g01109 Chy-Chr10:16125883 7.75E-09 transposed
Chy10g01109 Chy-Chr10:16125883 Chy09g00904 Chy-Chr9:11828459 1.83E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008211 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01109 Chy_Chr10 FPKM 12.61747 14.853677 10.305133 8.693876 23.53652 19.546528 19.637487 4.516785 4.67283 3.992006