Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01113 ATGATGTATGGAGTAGAGCATCATCATCATGGAATTGGAAGATCGGGGTTAATTTTTCCACCCGAAGTCATGCCACCGATGCTGCAACCTTGGTCGTCGCTTAATCCGTTTATGATCCCTCCACCACCACCGCCGCCTCTACCAACATCATTATCATGTTCATCGTCGTCTTATGGTAGTTTGTTTAACCGAAGGCCACCTAATTGTCTTCAATTTGCTTATGATGGTCCATCTTCGGCTGACCATCTGGGTCGAATCATATCGACGACGCTAGGACCGGTGGTTCATCCAGGTTCCACGGCTCCATTTGGGCTACAAGCTGAGCTTGGGAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGCTAAGGAGCATACTCCCTAGTACCACTAAAATCCTAACTCGATCTGCCAACGAACACGTGAAAGAGCTGAAACGACAAACATCAATAATAGCGGAAACAAGTCCAATACCAACAGAAGTTGATGAAGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATAATGGATCAATATCATCATCAGCCAAGTTTGTAATAAAGGCTTCTCTTTGCTGTGAAGACCGTTCAGATCTTCTTCCTGATCTCATCAAAACCCTCAAATCTTTACGTTTAACAACACTCAAAGCTGAAATTACAACACTTGGTGGTCGTTTAAGAAACAGTTGCAGTGAAGACTGTCGGGACTCTGCAGTTAGCTGA 810 43.21 MMYGVEHHHHGIGRSGLIFPPEVMPPMLQPWSSLNPFMIPPPPPPPLPTSLSCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPSTTKILTRSANEHVKELKRQTSIIAETSPIPTEVDEVSVDDASEQEMMMISNNGSISSSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNSCSEDCRDSAVS* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16161858 16166806 + Chy10G183070.1 Chy10g01113 235488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01113 269 Gene3D - 118 178 IPR036638 GO:0046983
Chy10g01113 269 Pfam Helix-loop-helix DNA-binding domain 127 153 IPR011598 GO:0046983
Chy10g01113 269 SMART finulus 130 175 IPR011598 GO:0046983
Chy10g01113 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 179 IPR011598 GO:0046983
Chy10g01113 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 175 IPR036638 GO:0046983
Chy10g01113 269 CDD ACT_UUR-ACR-like 219 254 - -
Chy10g01113 269 PANTHER TRANSCRIPTION FACTOR BHLH30 28 258 - -
Chy10g01113 269 PANTHER TRANSCRIPTION FACTOR BHLH30 28 258 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01113 Chy-Chr10:16161858 Chy12g00103 Chy-Chr12:1118448 1.15E-21 dispersed
Chy10g01113 Chy-Chr10:16161858 Chy03g01304 Chy-Chr3:16042531 3.52E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18625 PF00010 HLH 1.40E-08 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01113 - - csv:101214615 426.017