Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01117 ATGGACGGAATTTGCATTGACGAAACAACTTCCACCGAATCTAAATCTCCACCGCCGGACACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTCGTTCTGGATTCCGACTCCAGCGGCGGTGGAGTTGAAGCGGAGTCACGCAAATTACCATCTTCCCGTTACAAAGGAGTGGTACCACAGCCCAACGGCCGATGGGGGGCTCAGATTTACGAGAAGCATCAAAGAGTCTGGCTGGGTACTTTCAACGAAGAGGATGAAGCAGCACGTGCTTACGACGTCGCTGCTCAACGTTTCCGTGGCCGTGACGCTGTTACTAATTTCAAGCCGTTAGCACACGGCGGTGGTGAAGAAGACGACATCGTTTCCGCTTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGTTACGTAAGCATACTTATTTAGATGAACTCCACCAAAGCAAACGAAACGCTGGGTTATCCGGTTCCGATCGTAAACAAAACCGTTTGTTGTCCGGTTCCGATGATGATCCGGAAACCGCTCGGGAACTTTTATTTGAAAAAGCCGTAACTCCAAGCGATGTGGGGAAGTTAAACCGTTTGGTCATTCCAAAACAACACGCGGAAAAGAATTTCCCTTTACAAACCGGTTCGACCGCTTCCTCCAAAGGTCTATTGTTGAACTTTGAAGATGGAGGAGGGAAAGTGTGGCGGTTCAGGTACTCGTATTGGAATAGTAGCCAAAGCTATGTGTTGACAAAAGGATGGAGCCGGTTCGTGAAAGAGAAGAATTTGAAAGCCGGTGACATTGTTAGCTTCTTGAAATCAACTGGACAAGACAAACAGCTTTACATCGAATGGAAGGCACGAAAGGCTTCTACCACAACCGGGTCCGCTATCAACCCGGTTCAGACGTTTAGACTGTTTGGAGTTGACATTATCAAAGTTTCGCCCAATAGTGGGTGTAGTGAGAAGAGGAGGAGAGAATTGGAATTTCTCACTTTACAATGTACCAAAAAACAAAGGATTGTGGGAGCATTGTAA 1035 48.12 MDGICIDETTSTESKSPPPDTSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGGEEDDIVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGSDRKQNRLLSGSDDDPETARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKASTTTGSAINPVQTFRLFGVDIIKVSPNSGCSEKRRRELEFLTLQCTKKQRIVGAL* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16208218 16209252 + Chy10G183110.1 Chy10g01117 235492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01117 344 SUPERFAMILY DNA-binding pseudobarrel domain 181 275 IPR015300 -
Chy10g01117 344 Pfam B3 DNA binding domain 183 284 IPR003340 GO:0003677
Chy10g01117 344 MobiDBLite consensus disorder prediction 154 174 - -
Chy10g01117 344 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 14 344 - -
Chy10g01117 344 SUPERFAMILY DNA-binding domain 54 110 IPR016177 GO:0003677
Chy10g01117 344 SMART rav1_2 55 116 IPR001471 GO:0003700|GO:0006355
Chy10g01117 344 CDD B3_DNA 182 270 IPR003340 GO:0003677
Chy10g01117 344 ProSiteProfiles AP2/ERF domain profile. 55 110 IPR001471 GO:0003700|GO:0006355
Chy10g01117 344 MobiDBLite consensus disorder prediction 7 26 - -
Chy10g01117 344 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 344 IPR044800 GO:0003700
Chy10g01117 344 MobiDBLite consensus disorder prediction 1 26 - -
Chy10g01117 344 Gene3D - 170 297 IPR015300 -
Chy10g01117 344 SMART B3_2 183 288 IPR003340 GO:0003677
Chy10g01117 344 CDD AP2 54 109 IPR001471 GO:0003700|GO:0006355
Chy10g01117 344 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
Chy10g01117 344 Pfam AP2 domain 54 102 IPR001471 GO:0003700|GO:0006355
Chy10g01117 344 Gene3D AP2/ERF domain 54 111 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy09g00618 Chy10g01117 CCT
Chy09g00618 Chy10g01117 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02107 Chy-Chr2:25405981 Chy10g01117 Chy-Chr10:16208218 5.52E-56 dispersed
Chy09g00618 Chy-Chr9:7677062 Chy10g01117 Chy-Chr10:16208218 1.16E-136 dispersed
Chy10g01117 Chy-Chr10:16208218 Chy11g01776 Chy-Chr11:24118846 9.25E-48 dispersed
Chy10g01117 Chy-Chr10:16208218 Chy09g01354 Chy-Chr9:15378053 4.13E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18627 PF02362 B3 1.20E-27 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01117 K09287 - csv:101203784 669.848