Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01118 ATGGATTTCGTCCATAGTTTTCTGGATATTCGTGTTGGAATGGATTTGAGTAACTATGCTGATGCTTTGGATCGAGAACGCCAAAAAATTCAAGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTCGTTACTAGAGCTATTGATTCTTGCCGGCAGCAGTTGTCTGGGGTGTCGACAGAGAGCTCTGAGCATACATCAAGCGATCGCCCTGTTTTGGAGGAGTTTATTCCTATTAACAAACCTTGTGTGAATTCTCATTTTGAAATTGAAGAAGATGAACAATCAAAACCGGGGAAGATTGAATTGGGTCGATCAGATTGGCTCAAATCGGCTCAGCTTTGGAATCAATCGCCAGATCCTCCTCTCACAGAGGATGTTGCTAAGGCGGTTGTTGAGGTAAAAAGTAATGGCGGTGGCGGTGCTTTTCAACCATTTGAAAAAACAACTCCATTGAAAACAGAGTCGGCGGTGGTAGTCAGTAGGACGGCGGTTTCTTCATTTCCGGAGGCGACAACAACTTCAATTCCGGAAACGACAACAAGTTCGACGGCGGGAACCGCTTCTAAATGTGGCGGAGGAACTACTAAACGAGAAGATAAGGAATCTCAGACCCAAAGAAAACAGAGGCGGTGCTGGTCGTCAGAATTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCATGTTGCCACACCAAAACAAATCAGGGAGTTAATGAAGGTGGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAGTACCGATTACACGCAAGAAGGCCAACAAATACAGCAATGCAAGACAGCGGGAGCTCATCGGCGCACCAGCAATTCGTGGTGGTCGGAAGCATATGGGTTCCACCACCACCTCCACCGAAATACACGGTGGCAACAACAGAGAAAGGGAGAAATGGGATTTATGCTCCGGTGGGGACGTTGGTAGGAGGGAAGGCGAGCCAGAGCAGCGGGGGAATGGTTCATTCAAATTCGCCGGCCACATCTTCTTGCACTCACACCACCACAAATTCGCCGAATTCGCGATCGGCGGCATAG 1071 48.37 MDFVHSFLDIRVGMDLSNYADALDRERQKIQVFQRELPLCLELVTRAIDSCRQQLSGVSTESSEHTSSDRPVLEEFIPINKPCVNSHFEIEEDEQSKPGKIELGRSDWLKSAQLWNQSPDPPLTEDVAKAVVEVKSNGGGGAFQPFEKTTPLKTESAVVVSRTAVSSFPEATTTSIPETTTSSTAGTASKCGGGTTKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNTAMQDSGSSSAHQQFVVVGSIWVPPPPPPKYTVATTEKGRNGIYAPVGTLVGGKASQSSGGMVHSNSPATSSCTHTTTNSPNSRSAA* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16213952 16215394 + Chy10G183120.1 Chy10g01118 235493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01118 356 MobiDBLite consensus disorder prediction 171 191 - -
Chy10g01118 356 MobiDBLite consensus disorder prediction 194 212 - -
Chy10g01118 356 MobiDBLite consensus disorder prediction 171 212 - -
Chy10g01118 356 Gene3D - 207 264 - -
Chy10g01118 356 Coils Coil 16 36 - -
Chy10g01118 356 MobiDBLite consensus disorder prediction 321 356 - -
Chy10g01118 356 SUPERFAMILY Homeodomain-like 205 266 IPR009057 -
Chy10g01118 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Chy10g01118 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Chy10g01118 356 PANTHER TRANSCRIPTION FACTOR HHO2 16 347 - -
Chy10g01118 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 347 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00032 Chy-Chr1:223102 Chy10g01118 Chy-Chr10:16213952 9.96E-18 dispersed
Chy02g00926 Chy-Chr2:6104993 Chy10g01118 Chy-Chr10:16213952 8.40E-34 dispersed
Chy05g01345 Chy-Chr5:17552342 Chy10g01118 Chy-Chr10:16213952 9.55E-14 dispersed
Chy10g01118 Chy-Chr10:16213952 Chy11g00433 Chy-Chr11:4223862 2.73E-51 dispersed
Chy10g01118 Chy-Chr10:16213952 Chy03g00325 Chy-Chr3:3985607 1.72E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18628 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01118 - - csv:101203539 665.611