Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01123 ATGGAGATTGCGATTCGTGGGAAATTAGCTCTCTCACCCAATCATGTCTTCAACCCCAAACCAGGGGACAGAAGCTCTGTGTGTAAAGGGCTATGCTTTAACTTTGGTGTGTCCGTTGTTAAATCAGCAGCAACAGCAGGAAGAGGAGGAGGGTTGTTGGAGAGACCTGTTATTGAGAAAGCAACTCCTGGAAGGGAATCTGAGTTTGATTTGAGGAGATCAAGGAAAATGACACCACCGTATCGTGTCATTCTGCATAACGACGACTTCAATAAACGAGAATATGTAGTTCAAGTCCTCATGAAAGTCATCCCTGGAATGACGCTTGACAATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATCTGTGCTCAGGCCGATGCTGAAGAACACTGCATGCAACTTAGAGGCAACGGGCTGTTAAGTTCAATTGAGCCTGCTAGTGGTGGATGCTGTTAA 480 45.62 MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGVSVVKSAATAGRGGGLLERPVIEKATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16251312 16253431 + Chy10G183170.1 Chy10g01123 235498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01123 159 Pfam ATP-dependent Clp protease adaptor protein ClpS 78 144 IPR003769 GO:0030163
Chy10g01123 159 Gene3D - 75 153 IPR014719 -
Chy10g01123 159 Hamap ATP-dependent Clp protease adapter protein ClpS [clpS]. 61 155 IPR022935 GO:0006508
Chy10g01123 159 SUPERFAMILY ClpS-like 75 153 IPR014719 -
Chy10g01123 159 PANTHER BNAA07G24510D PROTEIN 1 158 - -
Chy10g01123 159 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 1 158 IPR022935 GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01123 K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS - csv:101223092 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01123 Chy-Chr10:16251312 Chy12g01450 Chy-Chr12:18479892 2.16E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g275 Blo01g00491 . Bda01g02087 . . . . . . Cmo18g01053 . . . Car18g00962 Sed06g1868 Cpe09g00281 . Bhi07g01359 Tan04g0892 Cmetu10g1801 . Hepe01g1215 . . . . . . . . . . . . . Lsi04g00281 . Chy10g01123 Cme10g00283 . . . . . Bpe02g02278 Bma01g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002047 1 4 1 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 1 2 2 2 2 2 2 4 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01123 Chy_Chr04 FPKM 28.276569 34.694805 35.019745 39.659199 27.554379 21.388767 31.46249 20.533876 19.546715 24.230701
Chy10g01123 Chy_Chr10 FPKM 40.337933 44.760143 35.940975 34.641243 29.484795 25.534216 30.857616 22.410137 22.624523 26.551989