Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01124 ATGGAGCCGAAATCTTCAACCCCAGATGAAACTACAGTCTCTGATTCATCGTCCTTGTCTCTCCAGTTGAATTCCAGGATTTCTGTTATGAAAGCCTCGCACAGTGACTACAAATCCCTCACATTATCCAGACTGAAGCGTGACTCTGCTCGAGTCAGATCCTTGACTGCTAGGATAGATCTAGCCATTCGAGGAATTACGGGAACAGATCTTGAACCTCTCGGGAATGGTGGTGGTGGTGGTTCGCAATTTGGGGCTGAGGATTTCGAGAGTCCGATTGTGTCAGGCGCAAGTCAGGGGAGTGGTGAGTATTTCTCCCGAGTTGGAATCGGTAGGCCGCCGAGTCCGGTTTACATGGTGCTTGATACTGGCAGTGATGTAAGTTGGGTACAATGTGCTCCTTGTGCTGAATGTTACGAGCAAACCGATCCAATTTTTGAGCCGACTTCCTCTGCTTCTTTCACATCTTTGTCCTGTGAAACAGAGCAATGCAAATCGCTCGATGTTTCAGAGTGCCGGAATGGTACTTGTCTCTACGAAGTCTCTTACGGCGATGGCTCTTACACCGTCGGCGATTTCGTTACTGAAACCGTTACTCTGGGCTCGACTTCTCTCGGAAACATTGCCATTGGCTGCGGCCATAACAATGAGGGTTTGTTCATCGGCGCCGCCGGATTGCTCGGACTTGGCGGCGGCTCGCTCTCTTTTCCCTCACAGCTTAATGCCTCGTCTTTCTCGTACTGTCTCGTAGACCGTGACTCTGATTCCACCTCAACTCTCGATTTCAACTCACCTATTACTCCCGATGCTGTAACCGCGCCGCTTCACCGGAACCCTAATTTAGACACGTTCTTTTACCTTGGTTTGACGGGGATGAGCGTCGGAGGCGCTGTTCTTCCTATTCCCGAGACTTCGTTCCAAATGAGCGAAGACGGTAACGGCGGAATCATCGTCGACTCCGGCACCGCCGTAACGCGGTTGCAGACTACCGTTTATAACGTGCTTCGCGACGCGTTCGCCAAGAGCACGCACGATTTGCAGACCGCACGTGGCGTGGCGTTGTTCGATACATGTTACGACTTGTCGTCGAAGTCGAGAGTTGAAGTTCCGACGGTGTCGTTTCATTTCGCCAACGGGAATGAGTTGCCGTTGCCGGCTAAAAATTACCTGATACCGGTTGACTCCGAAGGAACCTTTTGTTTCGCTTTTGCCCCTACCGATTCCACGCTGTCAATCCTCGGGAACGCACAGCAGCAAGGGACACGTGTCGGTTTCGACCTTGCTAATTCGCTCGTTGGTTTCTCACCCAACAAATGCTAA 1320 51.36 MEPKSSTPDETTVSDSSSLSLQLNSRISVMKASHSDYKSLTLSRLKRDSARVRSLTARIDLAIRGITGTDLEPLGNGGGGGSQFGAEDFESPIVSGASQGSGEYFSRVGIGRPPSPVYMVLDTGSDVSWVQCAPCAECYEQTDPIFEPTSSASFTSLSCETEQCKSLDVSECRNGTCLYEVSYGDGSYTVGDFVTETVTLGSTSLGNIAIGCGHNNEGLFIGAAGLLGLGGGSLSFPSQLNASSFSYCLVDRDSDSTSTLDFNSPITPDAVTAPLHRNPNLDTFFYLGLTGMSVGGAVLPIPETSFQMSEDGNGGIIVDSGTAVTRLQTTVYNVLRDAFAKSTHDLQTARGVALFDTCYDLSSKSRVEVPTVSFHFANGNELPLPAKNYLIPVDSEGTFCFAFAPTDSTLSILGNAQQQGTRVGFDLANSLVGFSPNKC* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16255999 16257318 + Chy10G183180.1 Chy10g01124 235499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01124 439 PANTHER ASPARTYL PROTEASES 13 439 IPR001461 GO:0004190|GO:0006508
Chy10g01124 439 SUPERFAMILY Acid proteases 98 439 IPR021109 -
Chy10g01124 439 Pfam Xylanase inhibitor C-terminal 285 435 IPR032799 -
Chy10g01124 439 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 439 - -
Chy10g01124 439 Gene3D Acid Proteases 82 262 IPR021109 -
Chy10g01124 439 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 119 130 IPR001969 GO:0004190|GO:0006508
Chy10g01124 439 Pfam Xylanase inhibitor N-terminal 104 261 IPR032861 -
Chy10g01124 439 ProSiteProfiles Peptidase family A1 domain profile. 104 435 IPR033121 -
Chy10g01124 439 Gene3D Acid Proteases 263 439 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01124 K22683 APF2; aspartyl protease family protein [EC:3.4.23.-] - csv:101222856 831.247
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00551 Chy-Chr7:4691194 Chy10g01124 Chy-Chr10:16255999 1.21E-72 dispersed
Chy03g00812 Chy-Chr3:11296719 Chy10g01124 Chy-Chr10:16255999 1.56E-08 transposed
Chy06g00096 Chy-Chr6:651056 Chy10g01124 Chy-Chr10:16255999 8.71E-130 transposed
Chy08g00014 Chy-Chr8:484359 Chy10g01124 Chy-Chr10:16255999 2.66E-75 transposed
Chy10g00666 Chy-Chr10:13114549 Chy10g01124 Chy-Chr10:16255999 5.28E-125 transposed
Chy10g01124 Chy-Chr10:16255999 Chy12g01449 Chy-Chr12:18476558 0 wgd
Chy10g01124 Chy-Chr10:16255999 Chy02g02372 Chy-Chr2:27557037 1.62E-138 wgd
Chy10g01124 Chy-Chr10:16255999 Chy09g00907 Chy-Chr9:11865813 3.59E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g277 . . . . . Bpe10g00945 . Bma15g00079 . Cmo18g01052 . Cma18g01036 . Car18g00961 Sed07g2064 Cpe09g00282 . Bhi07g01357 Tan04g0891 Cmetu10g1611 Lac13g0470 Hepe01g1214 . . Cla05g02322 Cam05g2494 Cec05g2518 Cco05g2560 Clacu05g2488 Cmu05g2351 Cre05g2467 Cone13ag0848 Cone19ag0851 . . Lsi04g00280 Csa05g02091 Chy10g01124 Cme10g00282 Blo06g00969 . . . . . . . . . . . . . . . Cpe04g01410 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002030 1 2 1 2 2 2 4 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01124 Chy_Chr10 FPKM 21.12619 23.8652 9.47753 8.083973 14.218827 17.60795 10.941047 4.703216 4.061239 4.833113