Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01128 ATGAATGCAGCGTGTGGGATTAGCGGCGCAATTTATTTGGCAATACTATGCGTAACCGGTTGCTCGTGCTTGTACTCTTGCTTTTACCGCACAAGAATGAGAGGACAATTCTTATTAGAGGAAAGGCCTTTGAGTGATTGTTGCACCCATTGCTTGTGTGAGCAATGTGCCTTATGCCAAGAATATAGAGAGCTTCAGCATCAAGGCTTCGACATGTCCTTTGGGTGGCATGAGAATGTGGAAAGGCAGAGACGGATTGCTAATGCTGCTCAACCAATGCCACCTCCGACTGTGCAAGGAATGATTCGTTAA 312 46.15 MNAACGISGAIYLAILCVTGCSCLYSCFYRTRMRGQFLLEERPLSDCCTHCLCEQCALCQEYRELQHQGFDMSFGWHENVERQRRIANAAQPMPPPTVQGMIR* 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16266069 16266844 + Chy10G183220.1 Chy10g01128 235503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01128 103 Pfam PLAC8 family 5 64 IPR006461 -
Chy10g01128 103 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 4 67 IPR006461 -
Chy10g01128 103 PANTHER DUF614 FAMILY PROTEIN-RELATED 3 99 IPR006461 -
Chy10g01128 103 PANTHER PROTEIN PLANT CADMIUM RESISTANCE 1-RELATED 3 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01128 - - - cmo:103489559 213.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00226 Chy-Chr10:5738833 Chy10g01128 Chy-Chr10:16266069 8.96E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g282 . . . . . . Bma14g01899 Bma15g00082 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0844 Cone19ag0848 . . . Csa05g02069 Chy10g01128 Cme10g00278 . . Bda07g01713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01128 Chy_Chr10 FPKM 0.900729 1.551236 3.295551 2.872298 1.533249 1.393631 1.926253 11.188474 13.143845 13.648852