Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01134 ATGGGAAAGAAGCTTGATGCACTGCTGGGAAGAAGCTTTAAGACCACAAGGTTCAAAGCTCTTGTGAATTTGGCCATATCACGGCTCGCTGTTCTTGCAAACCAGCGCCAGGTTAGATCCTCCCAGGCTCGTTCTGATGTAGTTCAGTTGCTGCAGCTTGGCCACCATGAGAGAGCCCTCTTTCGTGTGGAGCAAGTTATCAAGGACCAGAAACTGTTGGATGCGTATGCTATAATAGAGAGTTATTGTGAGGTTGTATTGGAAAGAATCAAGCAACTTGAACATGAGAGAGAATGTCCAGAGGAACTTAAGGAAGCAATTTCAGGTTTGATTTTTGCATCTTCAAGATGTGGGGATTTTCCAGAGCTTATAGAGATTCGTTCAGTTATCACCACTCGTTTTGGGAAGGAGTTTACGGCTCGTGCTATTGAGTTGCGCAACAATTGTGCTGTTGGTCCAATGATAGTACAGAAGCTGTCAGCAAGGCCAGCAAGCTTGGAGATGAAATTGAAGTTACTTAAACAAATTGCTTCTGAACATGGCATTACTTTGAAAGATTTGGAGGCTTACGAAGCTTCAACTGAGGAGAAAGTTATGGTTATGGCAGAAGAGACGAAGAAACAACCACAGCAGGAAACCAAAGTGGAAGGTGTTTTTCAGAGTTTACCTGAAGAAATAGAGAAGGACAATCGGTATGCTGATTCGATGAGAGGAAGAAAGAAGTACAAAGACGTGGCGGATGCTGCTCAGGCAGCATTCGAGTCGGCTGCATATGCAGCAGCTGCAGCAAGAGCTGCAGTTGAACTCTCTCAATCTAAATCACTTGATCATGATGACCTGAGGAATCTGAGTCCAAAACCAAGAAAATCCACTGAAACTGTTGAATCCAAGGACACTGAGAAAGAAATGAACAAGGAAACACATGGTGGAAGTTCGTCCATAGAAGTGGAGGAGAGTGAAAATGAAACAGAATTGAAGCAGCCAGTGTCTTCTTCTAGTTCGGAAGCCGGGGATGCTAGTTTAAAGGAAAATGAGATTCCAATTGAAGCAATAAATATTATCGAACTGCTGGAGAAGGATTTAATTTTTGACGAGAGTGATGTTGATGCTGCGAATGGAGAAAGCAGCAGTTCGGCTCTTGAGGAGAGGAATTCGAGCCTCGAGTCTTGCGAGAAGATGGAGTCAGAGTCTGCAGAGATCACAGCAAACAATGAGGAATCTGATAACAATGATACTGCACAAAATATAAGCATAGGGAATGGTGCTGTTATAAGGACAATAGATGTCCGTGGGCACTGA 1299 43.65 MGKKLDALLGRSFKTTRFKALVNLAISRLAVLANQRQVRSSQARSDVVQLLQLGHHERALFRVEQVIKDQKLLDAYAIIESYCEVVLERIKQLEHERECPEELKEAISGLIFASSRCGDFPELIEIRSVITTRFGKEFTARAIELRNNCAVGPMIVQKLSARPASLEMKLKLLKQIASEHGITLKDLEAYEASTEEKVMVMAEETKKQPQQETKVEGVFQSLPEEIEKDNRYADSMRGRKKYKDVADAAQAAFESAAYAAAAARAAVELSQSKSLDHDDLRNLSPKPRKSTETVESKDTEKEMNKETHGGSSSIEVEESENETELKQPVSSSSSEAGDASLKENEIPIEAINIIELLEKDLIFDESDVDAANGESSSSALEERNSSLESCEKMESESAEITANNEESDNNDTAQNISIGNGAVIRTIDVRGH* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16299403 16301163 - Chy10G183280.1 Chy10g01134 235509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01134 432 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 8 404 - -
Chy10g01134 432 MobiDBLite consensus disorder prediction 400 415 - -
Chy10g01134 432 MobiDBLite consensus disorder prediction 271 324 - -
Chy10g01134 432 MobiDBLite consensus disorder prediction 385 399 - -
Chy10g01134 432 Coils Coil 390 410 - -
Chy10g01134 432 MobiDBLite consensus disorder prediction 370 415 - -
Chy10g01134 432 MobiDBLite consensus disorder prediction 325 339 - -
Chy10g01134 432 Gene3D - 6 194 IPR042277 -
Chy10g01134 432 MobiDBLite consensus disorder prediction 370 384 - -
Chy10g01134 432 PANTHER IST1 FAMILY MEMBER 8 404 IPR005061 GO:0015031
Chy10g01134 432 Pfam Regulator of Vps4 activity in the MVB pathway 19 182 IPR005061 GO:0015031
Chy10g01134 432 MobiDBLite consensus disorder prediction 270 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01134 - - - csv:101220964 723.005
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00604 Chy10g01134 CCT
Chy09g00604 Chy10g01134 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01134 Chy-Chr10:16299403 Chy11g01157 Chy-Chr11:17550925 3.20E-36 dispersed
Chy02g00523 Chy-Chr2:3166011 Chy10g01134 Chy-Chr10:16299403 5.33E-43 transposed
Chy02g01190 Chy-Chr2:8539682 Chy10g01134 Chy-Chr10:16299403 6.43E-43 transposed
Chy03g00282 Chy-Chr3:3009198 Chy10g01134 Chy-Chr10:16299403 2.35E-42 transposed
Chy06g01382 Chy-Chr6:14275096 Chy10g01134 Chy-Chr10:16299403 3.35E-66 transposed
Chy09g00604 Chy-Chr9:7269635 Chy10g01134 Chy-Chr10:16299403 2.33E-42 transposed
Chy10g01134 Chy-Chr10:16299403 Chy03g00330 Chy-Chr3:4119767 2.40E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012784 1 2 0 0 1 0 2 0 0 1 1 1 2 1 1 2 1 0 1 0 1 1 1 1 1 1 1 1 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01134 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0