Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01139 ATGAAGATTTTTGTCAAGACTCTCAAGGGCTCACACTTCGAAATCGAAGTTCAGCCGGCAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCTGATGTTTACCCTGCTGCACAGCAGATGCTTATCCATCAAGGGAAAGTCCTTAAAGATAGCTCAACACTGGAGGAAAATAAAGTTGCAGAAAATAGTTTTATTGTAATAATGTTAACAAAGAATAAAAGTTCATCAGGTGGGACATCTTCTACCACACAAGCTGCGCCAGTAGCAAAGGCACCACAGAGCACTGCCCCTGCGCCTGCTGCTACTCCAGTGTCAACTACTGAAGTTCCGTTACCGACTTCAGCACCGCCTGCTAGTGTTACTGCTTCTTCTCCTCCCGCTCCCTCTCCTGCTCCTGCTCCTGCTCCTGCTCCTACTCCTACTCCTACTCCGGCTGCAGCTCCAGCTCCAGCTCTTGCAACTACTGTTTTGCCAGAAACCGATGTCTATAGCCAAGCAGCTTCTAACCTGGTTGCCGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTGACATGGGCGAAGGGGTTTGGGACAGGGACACTGTTGTTCGGGCGCTTCGTGCTGCTTACAACAATCCAGAAAGGGCTGTTGATTACCTTTATTCTTTTTCTTTTGAGGATTTCCTTCAGTCGGGGAATGGGCCTTGGCCTGGAATACCTGAACAAGTTGAAGCCCCACCTGCTCGAGTTCCGTCTACCGTGCAAGCAAGCAACCCTTCTGCTCAACCTGCACAGCCAGCCCAACCTGCATCTGTGCCGTCATCAACTGGCCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGCTTGCCTAATATTGGTTCCGGAGCTGTTGGTTCCGGCAGTCTTGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCAATGGTCCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGGCTTATTCAAGATCATCAACCTGACTTCCTTCGCTTGATTAATGAGCCCCTCGAAGGAGAAGGAAATATACTTGGGCAGCTAGCTGAGGCTATGCCCCAGGCTATAACTGTAACCCCGGAGGAGCGTGAAGCCATTCAACGGCTTGAGGATATGGGTTTCGACAGAGGTCTAGTTGTGGAGGTTTTCTTTGCATGCAACAAAAACGAGGAAATGGCTGCCAACTACCTTTTAGATCATATCCACGAATTTGAGGGTAATCAGAACTAA 1290 48.22 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLEENKVAENSFIVIMLTKNKSSSGGTSSTTQAAPVAKAPQSTAPAPAATPVSTTEVPLPTSAPPASVTASSPPAPSPAPAPAPAPTPTPTPAAAPAPALATTVLPETDVYSQAASNLVAGSNLEETIQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSFSFEDFLQSGNGPWPGIPEQVEAPPARVPSTVQASNPSAQPAQPAQPASVPSSTGPNANPLDLFPQGLPNIGSGAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDMGFDRGLVVEVFFACNKNEEMAANYLLDHIHEFEGNQN* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16327658 16333467 - Chy10G183330.1 Chy10g01139 235514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01139 429 Gene3D - 1 80 - -
Chy10g01139 429 Pfam XPC-binding domain 302 357 IPR015360 GO:0003684|GO:0006289|GO:0043161
Chy10g01139 429 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 426 - -
Chy10g01139 429 MobiDBLite consensus disorder prediction 103 123 - -
Chy10g01139 429 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 426 - -
Chy10g01139 429 MobiDBLite consensus disorder prediction 78 95 - -
Chy10g01139 429 SUPERFAMILY UBA-like 165 221 IPR009060 GO:0005515
Chy10g01139 429 Gene3D - 174 221 - -
Chy10g01139 429 PRINTS DNA repair protein Rad23 signature 393 407 IPR004806 GO:0006289
Chy10g01139 429 PRINTS DNA repair protein Rad23 signature 328 350 IPR004806 GO:0006289
Chy10g01139 429 PRINTS DNA repair protein Rad23 signature 408 423 IPR004806 GO:0006289
Chy10g01139 429 PRINTS DNA repair protein Rad23 signature 376 392 IPR004806 GO:0006289
Chy10g01139 429 Gene3D - 293 357 IPR036353 GO:0003684|GO:0006289|GO:0043161
Chy10g01139 429 SUPERFAMILY UBA-like 362 424 IPR009060 GO:0005515
Chy10g01139 429 MobiDBLite consensus disorder prediction 78 153 - -
Chy10g01139 429 TIGRFAM rad23: UV excision repair protein Rad23 1 425 IPR004806 GO:0006289
Chy10g01139 429 MobiDBLite consensus disorder prediction 235 287 - -
Chy10g01139 429 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Chy10g01139 429 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Chy10g01139 429 MobiDBLite consensus disorder prediction 124 152 - -
Chy10g01139 429 SMART uba_6 382 419 IPR015940 -
Chy10g01139 429 SMART uba_6 181 221 IPR015940 -
Chy10g01139 429 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 379 420 IPR015940 -
Chy10g01139 429 Pfam UBA/TS-N domain 181 219 IPR015940 -
Chy10g01139 429 Pfam UBA/TS-N domain 382 417 IPR015940 -
Chy10g01139 429 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Chy10g01139 429 SUPERFAMILY XPC-binding domain 298 363 IPR036353 GO:0003684|GO:0006289|GO:0043161
Chy10g01139 429 MobiDBLite consensus disorder prediction 250 281 - -
Chy10g01139 429 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 179 222 IPR015940 -
Chy10g01139 429 SMART CBM 300 343 IPR006636 -
Chy10g01139 429 Gene3D - 374 421 - -
Chy10g01139 429 CDD Ubl_Rad23 1 74 - -
Chy10g01139 429 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01139 K10839 RAD23, HR23; UV excision repair protein RAD23 - csv:101220491 647.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01500 Chy-Chr4:21635108 Chy10g01139 Chy-Chr10:16327658 9.86E-121 dispersed
Chy10g01139 Chy-Chr10:16327658 Chy02g00381 Chy-Chr2:2432037 1.39E-06 dispersed
Chy10g01139 Chy-Chr10:16327658 Chy06g01793 Chy-Chr6:21471493 8.03E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01139 Chy_Chr10 FPKM 98.485718 107.250931 0.0 0.0 0.53322 0.472487 0.309957 0.459257 0.356878 0.418466