Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01148 ATGACGACAAGGAAAAGTGTGGAGAGAACAGCAGAGGGAGGCAAGACTGCCAGAGCCTGTGATAGCTGTATCAGCAAGCGGGCTCGGTGGTACTGCGCTGCCGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTCAGTCCACTCCGCCAACTCCTTGGCTCGTAGACATGAGCGAGTTCGTCTTCAAACTGCCTCGTTCAGACCCTCTTCAGACAACTCCTCTGCTGCCTCATGGCACCAGGGCTTCACCAAAAAGCCACGGTCGCCTCGAATGGGAAAGACTGCTCCGACGAGGAAACCATTTCCACAGGTACCGGAGGTTAGTGCTAAAGAAGAATCTGAAGAACAAGAACAGCTTCTCCTTCACAGAGTTCCTGTATTGGGAGCTGATTCAAAGGATGGCAATTTGGCTAGTTTTGTTGGGGAAAAAGAAAGCTCAAATGGTTATCTCTCGTATGATATGGATCCTGCTGAATTCGCAGCTGATGTTGAGAGTTTATTGGGAAACTCGCTTGATAATGAGTGCTTTGATATGGAAGAACTGGGGCTAGTAGCTTCCAAAGACCACTCAATGACAAACGATGATTATTCTTTAAACAGCCACGAAATTATTAAAATTGAACCAGATGAGATAGAGGTATTAACTCCGATGCTCGGCGTAGAAGCCGATACAATGAGGGAGCCATTTGAGCTGAACTTTATGGACTTTGGCAACAATCCGACAACTTGCGGTGAGGAAGACGACAAGATGATGATGGAAGTCATGGCAGTGGTGAAGAACGGTGAACTTGAGATGGAAGAGACAAAGATTGTTAAAAGCAAAAAGAAAGTATCATTGAGTTTGAATAGTGAAGCAGTGATTATAGCTTGGGGAAGTAGAGGAACTCCATGGACATCCGGCGATCGACCGAAACTCGACCTCGATTATTACTGGCCGGACTACATGGGTACGTACGAGAGTGATTGTTACTATCAACCTTATGGGGAGTTTGGCAGCGGAATTGGCCGACAAGCGGTAACCGGAGTCGAAGGAGAGAGAGAAGCGCGAGTGTCAAGGTACAGAGAGAAGAGAAGGACGAGATTATTCGCAAAGAAAATAAGATATGAAGTTAGGAAATTGAATGCAGAGAAGAGACCGAGAATGAAAGGGAGATGGATAAGACCAGAGTTGGTAACCACCACTCAAACACCACACAAGTCTATTAATAAAAAAGAAAAAGAAAAAGATGGAAATTTTGCAAAGGCACAGTAA 1254 45.53 MTTRKSVERTAEGGKTARACDSCISKRARWYCAADDAFLCQACDASVHSANSLARRHERVRLQTASFRPSSDNSSAASWHQGFTKKPRSPRMGKTAPTRKPFPQVPEVSAKEESEEQEQLLLHRVPVLGADSKDGNLASFVGEKESSNGYLSYDMDPAEFAADVESLLGNSLDNECFDMEELGLVASKDHSMTNDDYSLNSHEIIKIEPDEIEVLTPMLGVEADTMREPFELNFMDFGNNPTTCGEEDDKMMMEVMAVVKNGELEMEETKIVKSKKKVSLSLNSEAVIIAWGSRGTPWTSGDRPKLDLDYYWPDYMGTYESDCYYQPYGEFGSGIGRQAVTGVEGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRWIRPELVTTTQTPHKSINKKEKEKDGNFAKAQ* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16403867 16407824 + Chy10G183420.1 Chy10g01148 235523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01148 417 MobiDBLite consensus disorder prediction 65 116 - -
Chy10g01148 417 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Chy10g01148 417 MobiDBLite consensus disorder prediction 400 417 - -
Chy10g01148 417 CDD Bbox1_BBX-like 19 62 - -
Chy10g01148 417 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Chy10g01148 417 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Chy10g01148 417 MobiDBLite consensus disorder prediction 388 417 - -
Chy10g01148 417 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 392 - -
Chy10g01148 417 MobiDBLite consensus disorder prediction 65 82 - -
Chy10g01148 417 Pfam CCT motif 347 388 IPR010402 GO:0005515
Chy10g01148 417 SMART bboxneu5 15 62 IPR000315 GO:0008270
Chy10g01148 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01148 - - - csv:101212689 756.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00386 Chy-Chr9:3393961 Chy10g01148 Chy-Chr10:16403867 2.71E-15 dispersed
Chy10g01148 Chy-Chr10:16403867 Chy02g02192 Chy-Chr2:26089518 1.93E-07 dispersed
Chy01g00228 Chy-Chr1:1570872 Chy10g01148 Chy-Chr10:16403867 4.95E-07 transposed
Chy10g01148 Chy-Chr10:16403867 Chy02g02366 Chy-Chr2:27516647 6.30E-72 wgd
Chy10g01148 Chy-Chr10:16403867 Chy03g00351 Chy-Chr3:4598139 2.20E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18630 PF00643 zf-B_box 2.20E-07 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01148 Chy_Chr10 FPKM 22.874252 30.104176 24.407042 25.93355 30.920332 33.321564 23.65637 29.838776 29.169708 31.636789