Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01149 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGACGACTGTATAATTAGACCTTGTCTTCAATGGATTCCCTCCTCCGAATCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTTTATGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCATTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCTGTGTACGGTTCTGTTGGATTACTCTGCTCCGGCGACTGGGAACGCTGTCAGGCAGCCGTCGACGCCGTCTTGAACGGATCCATGAACGTCGAACCAGATACGCCGCCGTCAAACAACGGTAACCTTTCCCTCAAATGCTGCGACATTCGCCACGTTTGTAACGAACCCAATTTGGCTGCTTCCGGCGATCTTCTCAAGGTCAAGGGTCGTAGCCGGTTCAAGAAGCCTGATCATCGAACCAAAGCAAAACCCGGGCCGGATCATGACTTAGGAATTGGGTCAAGTTTTGATGAAGCGGGCCGGGATCTGAGCAATGGAAGCCGGTTTGAGAAGGCCGACGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 618 52.91 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSSESQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNGNLSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKAKPGPDHDLGIGSSFDEAGRDLSNGSRFEKADDVELELTLKSAQ* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16407999 16409150 - Chy10G183430.1 Chy10g01149 235524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01149 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 41-LIKE 1 167 - -
Chy10g01149 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 167 - -
Chy10g01149 205 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Chy10g01149 205 MobiDBLite consensus disorder prediction 150 189 - -
Chy10g01149 205 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01370 Chy-Chr6:13820404 Chy10g01149 Chy-Chr10:16407999 2.01E-48 dispersed
Chy07g00181 Chy-Chr7:1489053 Chy10g01149 Chy-Chr10:16407999 1.87E-38 dispersed
Chy10g01149 Chy-Chr10:16407999 Chy04g01431 Chy-Chr4:20958581 3.26E-10 dispersed
Chy10g01149 Chy-Chr10:16407999 Chy02g02365 Chy-Chr2:27514042 1.24E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18631 PF03195 LOB 5.00E-23 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01149 - - csv:101212446 422.55