Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01159 ATGCACAATAGATACGGAGTTTGTTCATACTCTTCAAGAGAATATAAGAAACTTAGATGCGGTCTTCTTGAGAAAGCAAAGGATATATGTGCTGGAAGAGGGGTGGCTGCTATATCCATCACAGAAGATGGGGACCCTGGAAAGACCATATGTGATACGGTTGAAAAGCTTAATATAAGTTTGCTTGTTTTGGGTGATCGTGGCCTTGGGAGGATTAAGAGAGCTCTTCTAGGGAGTGTGAGCAACTATTGCGTTCAAAATGCCAAGTGTCCTGTCCTTGTTGTGAAGAAACCATAG 297 42.42 MHNRYGVCSYSSREYKKLRCGLLEKAKDICAGRGVAAISITEDGDPGKTICDTVEKLNISLLVLGDRGLGRIKRALLGSVSNYCVQNAKCPVLVVKKP* 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16465795 16466575 - Chy10G183530.1 Chy10g01159 235534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01159 98 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 97 - -
Chy10g01159 98 PRINTS Universal stress protein signature 56 68 IPR006015 -
Chy10g01159 98 PRINTS Universal stress protein signature 74 96 IPR006015 -
Chy10g01159 98 Gene3D HUPs 7 98 IPR014729 -
Chy10g01159 98 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 14 98 - -
Chy10g01159 98 CDD USP_Like 22 95 - -
Chy10g01159 98 PANTHER UNIVERSAL STRESS PROTEIN A-LIKE PROTEIN 14 98 - -
Chy10g01159 98 Pfam Universal stress protein family 25 96 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01159 - - - csv:101218192 167.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00709 Chy-Chr6:4827008 Chy10g01159 Chy-Chr10:16465795 2.47E-18 dispersed
Chy09g00342 Chy-Chr9:2991424 Chy10g01159 Chy-Chr10:16465795 1.11E-14 dispersed
Chy10g01159 Chy-Chr10:16465795 Chy03g01300 Chy-Chr3:15990237 7.74E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g322 . . . . . . . . . . . . . . . . . Bhi07g01312 . . Lac13g0509 . . . . . . . . . . . . . . . Csa05g02624 Chy10g01159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01159 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0