Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01161 ATGGTTTGTGCCGATTCCGAACAAACACCACTAAACTCCATGGCGATGGGACTCGAGAGATCGAAGCCGCTTCACAATTTCACCCTCCCTTTTTTGAAGTGGGGAAATCAGAGGTATCTACGCTGTATGAAATTGGACTCCGATGCCCCTCACACCGACGACGACGACGACCTTCCTCCCCCCGTCGATCGCCGCCCTTCTTCCGCTCACCGGTTCAACTGCCGGAAGTTTCACACCGACAAGCCCACGTTATTTAAGGATTCCGCCAAGAGACCTAGGGCTTCTAAGTCTAAGATCCACGATAATTACGATGGCGATGAAGATATAGCGGCGGTGAGAGAGAAACTCATGATTGATCTAAAAACCGCTGCCGATAGAATGAAGGTTGCATTCTGGAGAGATGGAGTGGTCGACGATGATGATGGCGATGGCGATGACGGCGATGCGACCATCCAGAAGAAAAAAATTCCGACGGCACCGGCACCGGAGAAGGAGTTAAGACCGTGGAGTTTGAGGGCGAGGAAGGCGGCATCGAAGGCTTTGATTGATACAATTACCGAAGGTAAAGGCGGCGGCGGCGGCGGCGGTGATGGTAAAGTGGTGAAGATCGAGAAGAGGTCGGAGAAAAAGGCGATTCGTAATTCGCCGTTGAGAAGCGGTGACGGCGGCGGTAGCGTGAAGTCTTCAGGGCGGCGATTGATAACGGAGAAGAAGGAAAGGGAGAAATTCTCGGTATCACTTTCCAAAAAGGAGATCGAAGAGGATTTCATGGCTATGATTGAACGCAGGCCGCCGCGACGGCCCAAAAAGAGGCCCAGAATTGTACAAAATCAAATGGATACGCTTTTTCCAGGATTATGGTTGACGGAGATCACCCCCGATCTCTACGACGTGCCGGAAATCCAAGAAAACGGAAAGGTATGGCGGTTTAGACCACTCGACCACACTGACCCGCTAAATTCACAAACCCAATTCACTCCGATTGCCATTCTCAACAAATCCGCCGACGACAGCACAAGAATCCGCGCGATGTTGCAGTCTTCCATTACTCCGATTCAATCGCCGTCACCGATTTTCCATGAAAAAACTAATGGGTTCCCAGTCCCTCCATCAGTTGTCTTCCCCATTGCCCGGTCGTCGACATCTTTACGCCTACGATCTCTCCCAGTAACCAGAAGCTTTATCTCTTCTTCTTTTGATCTCAAAGCCGGCAAAGGCGGCCTTCGCGCATTATGTCTCCCCGTCCCCTCTCTCGGGGAAAACAACTGGATGGATAGTTTTCTAGATATTGAACTCAAAGTTCGTGATTATGAGCTGGATCAATTTGGAGTTGTGAACAATGCTGTTTATGCAAGTTATTGCCAACATGGTCGTCATGAACTGCTGGAAAGTATAGGCCTCAGTCCTGATGCAGTTGCTCGTGATGGAGATGCATTAGCTTTATCAGAATTGTCTTTGAAGTTCCTCGCACCACTTAGAAGTGGTGACAAATTTGTTGTTAAAGTGAGGATCTCAGGCATATCAGTTGCTCGCTTCTACATTGATCATTTAATTTTCAAGCTTCCAAATATGGAGCCAATCTTGGAGGCGAAGGGTACAGCAGTTTGGCTTAACAAAAGTTATCGCCCAGTGCGTATTCCACAAGAGTTTCTATCCAAATTTGGTCAATTTGTTCGGGATCACGAGTCCAATCAAGGTTACAAGATGGATGAGTTCCAAGATTTTGAGCTCAAAGTTCGTGATTACGAGCTGGATCAATTCGGCGTAGTCAACAATGCTGTTTATGCAGATTATTGCTACCATGGTCGTCACGAATTGCTAGAAAAGATGGGAGTGAGTCGGGATGCAATTACTCGGAGAGGGGAATCATTAGCGCTATCAGATTTGTCCATGAAATTCCTTTCATCACTTAGAAGTGGAGAGAGATTTGTTGTTAAAGTGAGGGTGTTGGGTATCTCAAAGGTTCGGATCTATATTCATCACTTGATTTTCAAGCTTCCAAATATGGAGGCAATCTTAGATGCAAAGGCTACAGCAGTATGGATTAATAAAAACAATCGTCCAGTTCGAATCCCTCAAGAGTTTTTCTCAAAATTTGCTGATTATGTTGGGGAACAGCAACAACATCAACATCAACATCAACAAGATCACTTCAAAACAGAACAAAATTAG 2172 46.73 MVCADSEQTPLNSMAMGLERSKPLHNFTLPFLKWGNQRYLRCMKLDSDAPHTDDDDDLPPPVDRRPSSAHRFNCRKFHTDKPTLFKDSAKRPRASKSKIHDNYDGDEDIAAVREKLMIDLKTAADRMKVAFWRDGVVDDDDGDGDDGDATIQKKKIPTAPAPEKELRPWSLRARKAASKALIDTITEGKGGGGGGGDGKVVKIEKRSEKKAIRNSPLRSGDGGGSVKSSGRRLITEKKEREKFSVSLSKKEIEEDFMAMIERRPPRRPKKRPRIVQNQMDTLFPGLWLTEITPDLYDVPEIQENGKVWRFRPLDHTDPLNSQTQFTPIAILNKSADDSTRIRAMLQSSITPIQSPSPIFHEKTNGFPVPPSVVFPIARSSTSLRLRSLPVTRSFISSSFDLKAGKGGLRALCLPVPSLGENNWMDSFLDIELKVRDYELDQFGVVNNAVYASYCQHGRHELLESIGLSPDAVARDGDALALSELSLKFLAPLRSGDKFVVKVRISGISVARFYIDHLIFKLPNMEPILEAKGTAVWLNKSYRPVRIPQEFLSKFGQFVRDHESNQGYKMDEFQDFELKVRDYELDQFGVVNNAVYADYCYHGRHELLEKMGVSRDAITRRGESLALSDLSMKFLSSLRSGERFVVKVRVLGISKVRIYIHHLIFKLPNMEAILDAKATAVWINKNNRPVRIPQEFFSKFADYVGEQQQHQHQHQQDHFKTEQN* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16467587 16475150 - Chy10G183550.1 Chy10g01161 235536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01161 723 Gene3D Hotdog Thioesterase 416 558 - -
Chy10g01161 723 Gene3D Hotdog Thioesterase 559 703 - -
Chy10g01161 723 Pfam Thioesterase superfamily 442 525 IPR006683 -
Chy10g01161 723 MobiDBLite consensus disorder prediction 49 68 - -
Chy10g01161 723 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 425 562 IPR029069 -
Chy10g01161 723 MobiDBLite consensus disorder prediction 206 232 - -
Chy10g01161 723 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 566 707 - -
Chy10g01161 723 PANTHER ACYL-ACYL CARRIER PROTEIN THIOESTERASE ATL1, CHLOROPLASTIC-RELATED 375 563 - -
Chy10g01161 723 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 570 709 IPR029069 -
Chy10g01161 723 Pfam Thioesterase-like superfamily 582 697 - -
Chy10g01161 723 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 566 707 - -
Chy10g01161 723 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 375 563 - -
Chy10g01161 723 CDD 4HBT 575 683 - -
Chy10g01161 723 CDD 4HBT 430 538 - -
Chy10g01161 723 Pfam Protein of unknown function (DUF1639) 247 296 IPR012438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01161 - - - csv:101211482 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01063 Chy-Chr9:13029798 Chy10g01161 Chy-Chr10:16467587 1.56E-09 dispersed
Chy10g01161 Chy-Chr10:16467587 Chy03g01633 Chy-Chr3:18231033 5.99E-10 dispersed
Chy03g00318 Chy-Chr3:3628350 Chy10g01161 Chy-Chr10:16467587 5.94E-50 transposed
Chy10g01161 Chy-Chr10:16467587 Chy02g02353 Chy-Chr2:27414126 1.84E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g323 . . . Bda11g00190 . . . . . . . . . . . Cpe09g00312 . . . . . . . . . . . . . . . . . . . . Csa05g02625 Chy10g01161 Cme10g00246 . . . Bda11g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01161 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0