Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01176 ATGACTTCCAGCGGGGGCGAGGTTGACGTCAAGGGAGTGTTTATAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGTGCTTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTTGCAATCTTCTCTCCTAAGTCTGCACAAATTTTGACTACTCTTCCCGGTCACAGCGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAATAAGTTTTCGTTTAGAGCCAAGCAACTCAAGTCTCATTATCTACTTTCTGGTGACTCTGATGGTGTCATTCATTTATGGGAGTTGTCTCTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTGCTGCACATGTAATTTCTGAAACGGTGGTAATTTTTGCGTCTGCTTCTTCAGATGGTTTAGTTTGTGTTTGGGAGGTTGCTTTTCCGACAGCAAATGAAGGTGATTGTAAATTGTTGTTGCTGGACACGCTCATGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCGGTCGTATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGGGCATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCCATGGGGAAAAATGGAGAAGCAAACAACATTATGCTTGTGAGTTCATCTCAGGACAGAGGCATACGTATATGGAAGATGGCTCTTCATGGTTCCTCAGTTGACATAAATGGAGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCCGGACCATTGACTTACCAGGTATCATTAGAGTCACTTTTGATTGGTCATGAGGATTGGGTATATTCGGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGTTCCATATCAATCTGAAAGCATTCTGTCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTGTGCTCTAGGATTTTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTACCAGTTCAGACAACTGGAAACCTCAAAAAGTTCCCTCAGGACATTTTGCCGCTGTCATGGACATTTCATGGGCCAGATTTGGTGATTATATAATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTTCTCCCTGGAAAAGTGTCAATTCTCTTGAAGGAGGTTCTTGGCATGAGATTGGTCGACCTCAAGTTCATGGTCATGATATTAATTGTGTGACCATAATACAAGGGAAGGGGAATCATCGGTTTGTGAGCGGAGCTGAGGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACCCTGCAGAACGTTTTGGCCAATGAAGATCACCTTGTGGATGTTCAGATTTTGGGTGCTAATATGTCGGCTCTTGGCCTTTCACAGAAACCTATTTATGTTCACTCTGCTGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTCGAAACCATTCCCGATGCAGTTCCTGTCATTCTTACTGAACCTCCCATAGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTATGTTGTGATAACAAGGGGAAGCTAGTTGTTTCATCCTGCAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAAATGGAGTTTTCCAATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTCTCTGTTTTCAAAATCCACAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAAGCACACAGAAGAATCATATGGTCATGCTCTTGGAACCCACATGGTCATGAGTTTGCAACTGGCTCTAGGGATAAAACTGTGAAGATATGGGCTGTGACACCTGAATCTTCAGTTAAGCAGCTAACAACTCTATCACAGTTCAAATCTAGTGTCACCGCTTTATCATGGGTCGGTCTCGACTCCAAGAGCAACGGATTCCTTGCAATTGGAATGGAAAATGGCCTCCTTGAGTTGTGGAATTTGTCTATTAAAAGAACAGATAACATTTACTCAAATGTAGTTGCTTCGGTCGCCATACGTCTAGATCCATTTATGTGCCATGTTTCGTCGGTCAACCGTTTGCAATGGAAGGAGCCAGAGAAGAGTGGTGAAGAGTGCAGGAAGCTGCAATTCGCATCCTGTGGCACTGACCACTGCGTTAGAGTGTTTGAGCTTGCGAATGACGACAGGTACCTTGCACAGTGTATGAAGAACTTAAGAACAGCTTTGAGAAGGAAGGAAGTTGAAGAGCTGCCAGAGTACATAAAGCAGCCTCACATAGCTTTATCACAAAAGAGTGGAAGATATCAAGGGAAACAACCCGGTGGTAAACACCCTTTTCTGAAGAGTGTTATACATCAGCCTGTCAAACATGAGCCATAG 2706 43.42 MTSSGGEVDVKGVFIGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHSASVNCTHWLPSNKFSFRAKQLKSHYLLSGDSDGVIHLWELSLLDQKWRNVLQLPKSHKKGITCIAAHVISETVVIFASASSDGLVCVWEVAFPTANEGDCKLLLLDTLMVGSKSMVALSLAELPGNVGRMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMGKNGEANNIMLVSSSQDRGIRIWKMALHGSSVDINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGVPYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGTSSDNWKPQKVPSGHFAAVMDISWARFGDYIISVSHDQTTRIFSPWKSVNSLEGGSWHEIGRPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNVLANEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGIDTLETIPDAVPVILTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDNKGKLVVSSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQMEFSNDDSMLLAVSRDRQFSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTPESSVKQLTTLSQFKSSVTALSWVGLDSKSNGFLAIGMENGLLELWNLSIKRTDNIYSNVVASVAIRLDPFMCHVSSVNRLQWKEPEKSGEECRKLQFASCGTDHCVRVFELANDDRYLAQCMKNLRTALRRKEVEELPEYIKQPHIALSQKSGRYQGKQPGGKHPFLKSVIHQPVKHEP* 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16565788 16573182 + Chy10G183700.1 Chy10g01176 235551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01176 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Chy10g01176 901 PANTHER ELONGATOR COMPLEX PROTEIN 2 7 833 - -
Chy10g01176 901 Gene3D - 678 871 IPR015943 GO:0005515
Chy10g01176 901 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 35 724 IPR011047 -
Chy10g01176 901 ProSitePatterns Trp-Asp (WD) repeats signature. 86 100 IPR019775 -
Chy10g01176 901 PRINTS G protein beta WD-40 repeat signature 86 100 IPR020472 -
Chy10g01176 901 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Chy10g01176 901 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Chy10g01176 901 SMART WD40_4 356 395 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 725 768 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 584 628 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 106 149 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 680 719 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 296 346 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 631 670 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 403 442 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 454 495 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 211 258 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 785 832 IPR001680 GO:0005515
Chy10g01176 901 SMART WD40_4 49 99 IPR001680 GO:0005515
Chy10g01176 901 PANTHER WD REPEAT-CONTAINING 7 833 - -
Chy10g01176 901 SUPERFAMILY WD40 repeat-like 684 848 IPR036322 GO:0005515
Chy10g01176 901 Gene3D - 402 523 IPR015943 GO:0005515
Chy10g01176 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 728 IPR001680 GO:0005515
Chy10g01176 901 Pfam WD domain, G-beta repeat 217 258 IPR001680 GO:0005515
Chy10g01176 901 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Chy10g01176 901 Pfam WD domain, G-beta repeat 404 441 IPR001680 GO:0005515
Chy10g01176 901 Pfam WD domain, G-beta repeat 303 346 IPR001680 GO:0005515
Chy10g01176 901 Pfam WD domain, G-beta repeat 689 718 IPR001680 GO:0005515
Chy10g01176 901 Gene3D - 23 269 IPR015943 GO:0005515
Chy10g01176 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 718 - -
Chy10g01176 901 Gene3D - 293 401 IPR015943 GO:0005515
Chy10g01176 901 Gene3D - 574 677 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01176 K11374 ELP2; elongator complex protein 2 - csv:101209018 1663.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01176 Chy-Chr10:16565788 Chy04g01930 Chy-Chr4:25250248 7.71E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01176 Chy_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0