Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01185 ATGAAGGACCGCTCTCCTTCCTCCAATGCCGCTGTCTACGTCCCTCCTCACATCCGTCTCCGCTCCGTTGTTACTCCTTCTAATAATTCATCTCCTGCTTCCGCTGTTGATTGCAAGCTCAAGACGACTCCACCATCGCTGCTCGATTCAGGAACCACTGCTTTGCCTTGCCTGCATGCTCGATCTCAAGAACTGCTCCCGACGGGGAACTCGCGTTTGCAGTGTGATTCGGCCTACGGCGATGCAGCTCCTACGGACAGTTGGAGTTTTAATTTCGAGTGTTCGCATCAATCGGGTATTACACCTTCTGTAAACATTGATTTGTGGAAAAGGAAGTTAGCTTTACTTTTACGTGACAAAGAGAAGCAAGAGTTGATTTCAAGGGAGAAAAAAGATAGACATGACTTTGAGGAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTATAGCCATCTATATGCCAAAGTTGCTGTTTTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGAGAGGTCGCTTTGCCTCCTGGGTTGCTTAGAAGAGTTGATGAACATCTAGGAGAATTTCTCTCTCAAAAGTCTAGGTGTAAAGGTTTTCAAGATATCTCTGTCTCTAGAACAAGCAGCAATGGAAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCCACAAGGATCTAGTAAGGCTGTGATGGAAAAAATTCTTTGGAGGAGAAGTTCACATCTACGTGATCAACAGCAAGCTTGGCAGTCATCTCTTGAAGGAAGAGAAATGCTGGAATTCCGGAGAAATCTTCCTGCTTACAAGGAGAAGGATGCATTATTGGACAGAATTTCACAGAATCAGGTTATTATTATTTCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAGTTCATTTTGGAATCAGAAATGGAATCACTCCGTGGGGCTGTTTGCAGCATTATTTGTACACAGCCAAGACGAATATCGGCTATGTCTGTCTCTGAGAGAGTTGCTTTTGAAAGGGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGATACTCATCTTCTCTTTTGCACTACGGGTATCTTGTTGAGAAGATTGCTGGTTGATAGAAATTTGAAAGGCATAACTCATGTTATTGTTGATGAAATTCACGAGCGTGGAATGAATGAAGATTTCCTACTCATTGTCCTGAAAGATCTCCTTCCTCGTCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAAGATATTCTAGAAATGACAGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGTCAGGAGAGGACGTGGAAAATGAGCAAACAAGCACCAAGAAAGAGGAAAACCCAGATTGCCTCTACCATTGAGGATGCCCTTACAGCAGCTGATTTTAAGGAGTACGGTCTTCAAACTCAGGAGTCTTTATCGTGTTGGAATCCAGACTGTCTTGGTTTTAATCTCATAGAATATCTTCTAGTCAGGATATGTGAGAGCGAAACACCTGGAGCTATTCTTGTTTTTATGACTGGGTGGGATGACATCAGTTCTCTCAAGGAGAAACTTCAGTCTCATCCTTTATTAGGAGATCCAACTCGTGTCATGTTGTTGGCATGCCATGGCTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTACTGAACCTGACAAAGGAGTTAGGAAGGTAGTGCTCGCAACAAATATTGCCGAGACAAGTATCACGATAAATGATGTCGTGTATGTTCTTGACTGTGGAAAGGCAAAAGAAACGTCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCTTCTTGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGCTACCATCTATATCCTAGGTGTGTGTTTGGTTCTTTTTCTGAGTATCAGCTACCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCTTGCAAATAAAAAGCTTAAAGCTTGGAAGTATATCAGAGTTTCTATCTAGGGCTTTGCAGTCACCAGAGCTACTTGCGGTTCAGAATGCTATTGAATATTTGAAGATCATTGGAGCATTCGATGAGAGTGAAAATCTTACTGTTTTAGGTCGTTATTTAACTATGCTCCCAATGGAACCAAAACTGGGAAAGATGTTGATAGTAGGTGCTATCTTCAATTGCTTGGATCCTATTATGACTGTTGTTGCTGGCCTCAGTGTGAGAGACCCTTTTCTAACGCCACTTGAGAAGAAGGATGCCGCAGAGGCTGCAAAATCCCAATTTTCACAAGATCATAGTGATCACCTTGCTATTATCCGGGCTTATGGGGCATGGAAAGAAGCCGAGAGGAACTATGGTGGATATGACTTTTGTTGGAAGAACTTCCTTTCTATACAATCGATGAAGGCTATTGATTCTTTAAGGAAGGAGTTTTTTTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCAGACACCTACAATGCCTGGAGTCTTGATGAACAGCTCATACGTGCAGTTATTTGCAATGGCCTCTATCCTGGAGTTTGCTCCGTTGTGCAAAATGAGAAGTCATTTTCTCTCAAAACTATGGAGGATGGCCAGGTGCTTCTCTATTCGAACTCGGTGAATGCTCGAGAGTCGAGGATTCCATATCCATGGATAGTTTTCAATGAGAAGATTAAAGTGAACTCCATTTTCCTTAGAGATTCAACAGCTATCTCTGACTCGATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATCATGAGGGACACTTGAAAATGTTGGGCGGCTTTTTGGAATTTTTTATGAAACCTGATTTAGCAGAGACATATCAGAAATTGAGAGTGGAACTTGAAGAGCTTATACGGATAAAGCTACTAAATCCAAAGATGGACTTGCACTCCCACCATGAGCTCCTATCTGCTGTACGCTTGCTTATTTCAGAAGACCAGTGTGAAGGTCGATTTGTTTTTGGCCGCCAGATCCTTCAGCAGCCCTCCAAGACATCAGCTCCAGCAGCAGCAGCAGCACCACCAACTGCTGTTTCAAGAATTGAAAGTGGACCTGGTGGGGACAATCCCAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCACCCATCTATAAGACTAAGCAATTGAAGAACAATCAATTTCGAGCAACTGTGGAATTTAATGGACTGCAAATTATGGGACAACCTTGTACCAACAAAAAGAATGCTGAAAAGGATGCAGCAGCCGAGGCTCTTGAGTGGTTGATGGGTGGAAATCAGATGGGGCACGACTATGTCAACCAAATGTCTATGATGTTAAAAAGGAGCAAGAAGGATCATAACTGA 3519 43.14 MKDRSPSSNAAVYVPPHIRLRSVVTPSNNSSPASAVDCKLKTTPPSLLDSGTTALPCLHARSQELLPTGNSRLQCDSAYGDAAPTDSWSFNFECSHQSGITPSVNIDLWKRKLALLLRDKEKQELISREKKDRHDFEEIAALASRMGLYSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVALPPGLLRRVDEHLGEFLSQKSRCKGFQDISVSRTSSNGSIATDEGLFEQPEPQGSSKAVMEKILWRRSSHLRDQQQAWQSSLEGREMLEFRRNLPAYKEKDALLDRISQNQVIIISGETGCGKTTQVPQFILESEMESLRGAVCSIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQERTWKMSKQAPRKRKTQIASTIEDALTAADFKEYGLQTQESLSCWNPDCLGFNLIEYLLVRICESETPGAILVFMTGWDDISSLKEKLQSHPLLGDPTRVMLLACHGSMASSEQRLIFTEPDKGVRKVVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFGSFSEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPIMTVVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDEQLIRAVICNGLYPGVCSVVQNEKSFSLKTMEDGQVLLYSNSVNARESRIPYPWIVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDHEGHLKMLGGFLEFFMKPDLAETYQKLRVELEELIRIKLLNPKMDLHSHHELLSAVRLLISEDQCEGRFVFGRQILQQPSKTSAPAAAAAPPTAVSRIESGPGGDNPKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGNQMGHDYVNQMSMMLKRSKKDHN* 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16622748 16633688 + Chy10G183790.1 Chy10g01185 235560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01185 1172 CDD DEXHc_RHA-like 291 451 - -
Chy10g01185 1172 SUPERFAMILY dsRNA-binding domain-like 1079 1161 - -
Chy10g01185 1172 Gene3D - 715 826 - -
Chy10g01185 1172 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 713 IPR001650 -
Chy10g01185 1172 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 452 IPR014001 -
Chy10g01185 1172 CDD SF2_C_RHA 456 681 - -
Chy10g01185 1172 MobiDBLite consensus disorder prediction 1058 1086 - -
Chy10g01185 1172 SMART ha2_5 735 825 IPR007502 GO:0004386
Chy10g01185 1172 SMART ultradead3 273 466 IPR014001 -
Chy10g01185 1172 Gene3D - 538 691 IPR027417 -
Chy10g01185 1172 Gene3D - 1070 1150 - -
Chy10g01185 1172 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 77 1091 - -
Chy10g01185 1172 Pfam DEAD/DEAH box helicase 285 435 IPR011545 GO:0003676|GO:0005524
Chy10g01185 1172 Gene3D - 232 453 IPR027417 -
Chy10g01185 1172 PANTHER ATP-DEPENDENT RNA HELICASE 77 1091 - -
Chy10g01185 1172 SMART DRBM_3 1084 1147 IPR014720 -
Chy10g01185 1172 SMART helicmild6 567 673 IPR001650 -
Chy10g01185 1172 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 891 973 IPR011709 -
Chy10g01185 1172 Pfam Helicase conserved C-terminal domain 541 672 IPR001650 -
Chy10g01185 1172 Pfam Double-stranded RNA binding motif 1084 1146 IPR014720 -
Chy10g01185 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 839 IPR027417 -
Chy10g01185 1172 Pfam Helicase associated domain (HA2) 736 813 IPR007502 GO:0004386
Chy10g01185 1172 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1083 1148 IPR014720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01185 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101208774 2251.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01185 Chy-Chr10:16622748 Chy10g01209 Chy-Chr10:16809856 0 dispersed
Chy01g01510 Chy-Chr1:20772243 Chy10g01185 Chy-Chr10:16622748 5.76E-89 transposed
Chy01g01774 Chy-Chr1:23380130 Chy10g01185 Chy-Chr10:16622748 5.51E-44 transposed
Chy03g01667 Chy-Chr3:18435215 Chy10g01185 Chy-Chr10:16622748 3.99E-78 transposed
Chy04g01853 Chy-Chr4:24709459 Chy10g01185 Chy-Chr10:16622748 0 transposed
Chy06g01150 Chy-Chr6:10082066 Chy10g01185 Chy-Chr10:16622748 1.27E-172 transposed
Chy06g01813 Chy-Chr6:21800351 Chy10g01185 Chy-Chr10:16622748 1.53E-75 transposed
Chy07g00894 Chy-Chr7:12509122 Chy10g01185 Chy-Chr10:16622748 7.52E-58 transposed
Chy07g01060 Chy-Chr7:15540073 Chy10g01185 Chy-Chr10:16622748 1.23E-62 transposed
Chy07g01678 Chy-Chr7:20658685 Chy10g01185 Chy-Chr10:16622748 6.28E-52 transposed
Chy12g00901 Chy-Chr12:14400868 Chy10g01185 Chy-Chr10:16622748 1.17E-92 transposed
Chy10g01185 Chy-Chr10:16622748 Chy02g02334 Chy-Chr2:27293222 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01185 Chy_Chr10 FPKM 195.580643 203.020187 271.018158 282.787689 37.99379 32.4879 35.75737 179.502655 191.210831 208.624649