Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01191 ATGGCTGACTCATCACCATTGTTGGAAAGGACGGACGACAGGAGAGAAACAACGAGAGCTGCTTTTTTATCGGAGGCAAAGACTGTTGGGTTCTTAGCGGCTCCATTGGCTGCTATCAATCTCTCTCAGTTTTTGATTCAGACTGGTTCTTTGATGATTGTGGGTCATCTTGATGAACTTTCTCTTTCCAGTACCGCCATAGCTGTTTCTTTAGCTGCTGTTACTGGATTCAGTATTGGCATGTCTAATGCCCTTGAAACTCTATGTGGCCAAGCTTATGGGGCTGGACAATATAAAAAATTTGGAAATCATGTTTACACTGCTATGGTATGTCTCCTAGTAGTTTGCCTCCCATTAACTATATTGTGGATCAACATGGGGAAGCTACTTGTTTTCGTTGGCCAAGATCCTTTGATATCACTTGAAGCTGGGAAGTTCATGATTTGTCTTATTCCCGGGCTCTTTGCTTTCGCATTTCTTCAGCCACTTATGAGATATTTTCAGATGCAAGTTTTAGTGATTCCCATGCTTGTAATTAGTTGGATCACCTTTTGTGTGCATATACCACTCTGTTGGGTTTTGGTGTATAAAACAGGACTCCACAACCTTGGTGGAGCTTTAGCCATGAGTATTTCATATTGGTTGAATGCAATTTTTCTTGGGTTATATATGAAATTTTCTCCCAAGTGTGAGAGAACCCGCTCTGCAATTTCTATGGAGGTGTTCAAAGGAATTGGAGTCTTCCTTCGCCTTGCTATACCTTCTGCAGTAATGACTTGCCTTAGTTGGTGGTCATTTGAGATGATTATCTTACTGTCTGGGCTTCTGCCAAATCCAGAGCTTGAATCTTCAGTTCTATCTGTTTGCTTCAATACCTTGACGACAGTATTTACATTAGCATGTGGAATTGGCAGCGCAGGCAGTACCAGAGTTTCAAATGAACTAGGAGCTGGGAAGCCCCAAGCTGCTCGTATAGCTGCTGGGGCAGCAATATTTCTTGCAGTTGTGGAGATCATCATAGTCAGCATGGTCCTCTTCGCACTTCGTCATGTTTTTGGTTATGCTTTCAGCAGCGAAAAGGAAGTTGTGGATTATGTTGCTGTCATGGCTCCCCTAGTTTGTTTGTCAATCATATTCGATGCCATCCAAGGGGCCATTTCAGGTGTTATAAGAGGATGTGGGTGGCAGCGCGTAGGGGCTTATATAAACTTGGGGGCTTTCTATCTTTGTGGAAATCCAGCTGCTATAGCACTTGGTTTCTGGGCACATCTAGGAGGGAGGGGCATGTGGATTGGCATTCTAACTGGGGCTTTTATACAAATGTTTCTACTCTCGATCGTCATGAGTCGCGTTAATTGGAACAAACAGGCAGAGGCAGCAAGGGAAAGGATCTTTGATGGAAAAGAAGAAAATAAATATGATGAACAAATTGTTTCATTAGCCATGGCCGACTCCCCATTGCTGGAATGTATCGAGAATAGCAGTGAAACAACATGGGTATCTTTCTTTCGGGAGGTGAAAGTTGTTGGGTTCTTAGCAGCTCCATTGGCTGCTATCAATCTCTCTCAGTTCTTGATTCAGACTGGTTCTTTGATGTTGGTGGGTCATCTCGATGAACTCTCTCTCTCCAGCACCGCCATAGCCATCTCTTTAGCTGCTGTTACTGGATTCAGTGTGCTTATAGGTATGGGTAGTGCCCTTGAAACTCTATGTGGGCAGGCTTATGGCGCTGGACAATATCGAAAATTTGGAAATCATATTTACACTGCTATTGTATGTCTCCTAGTAGTTTGCCTCCCAATAACTCTGTTATGGATCAACATGGGGAAGCTACTTGTTTTGATTGGCCAAGATCCTTTGATATCACATGAAGCTGGGAGGTTCATGATTTGGCTTATTCCTGGGCTCATTGCTTATGCATTTCTTCAGCCACTTGTGAGATATTTTCAGATGCAAGTTTTAGTGACTCCCATGCTTGTAATTAGTTGTATCATCTCTTGTCTGCACATACCCCTCTGTTGGGTTTTGGTGTATAAAACAGGACTCCACAACCTTGGTGGAGCTTTAGCCATGAGTATTTCATATTGGTTGAATGCAGTTTTTCTTGGGTTATATATGAAATTTTCTCCCAAGTGTGAAAAAACTCACGGTGCAATTTCTATGGAGGTGTTCAAAGGAATTGGAGTCTTCATTCGCTTTGCTATCCCTTCTGCAGTAATGACTTGCCTTAGTTGGTGGTCGTTTGAGCTGATTATCTTACTGTCTGGATTTCTTCCAAATCCAGAGCTTGAATCTTCAGTTCTATCTGTTTGCTTCAATACCTTGACAACGGCATTTACATTAGCATATGGAATCGGCAGTGCAGGAAGTACCAGAGTTTCAAATGAACTAGGAGCTGGGAAGCCGGAAGCTGCTCGCAAAGCTGCTGGGGCAGCAATATTTCTTGCAGTTGTGGAGATCATCATAACGAGTGTGGTCCTCTTTGCTGTTCGTCATGTTTTCGGTTATGCTTTCAGCAGCGAAAAGGAAGTTGTGGATTATGTTGCTGTCATGGCTCCCCTAATTTGTATATCAATCATATTCGATGCCATTCAAGGGGTCATTTCAGGTATTGCAAGAGGATGTGGTTGGCAGCGTATAGGGGCTTATATAAACTTAGGGGCTTTCTATCTCTGTGGAAATATAGCTGCTGTAGCTCTTGGTTTCTGGACAAATCTGAGAGGCAAGGGCCTATGGATTGGCATCCAAATTGGAGCTTTCGTGCAGATGCTTCTACTTGTGATCGTCTTGAGCCATGTTAATTGGAAAAACCAGGCAGATGAAGCAAGGGAGAGGGCCTTTGAAGGAAGATGCTTTGTAAATAAATATGAGGAGCAAAGTGTTTGA 2886 43.04 MADSSPLLERTDDRRETTRAAFLSEAKTVGFLAAPLAAINLSQFLIQTGSLMIVGHLDELSLSSTAIAVSLAAVTGFSIGMSNALETLCGQAYGAGQYKKFGNHVYTAMVCLLVVCLPLTILWINMGKLLVFVGQDPLISLEAGKFMICLIPGLFAFAFLQPLMRYFQMQVLVIPMLVISWITFCVHIPLCWVLVYKTGLHNLGGALAMSISYWLNAIFLGLYMKFSPKCERTRSAISMEVFKGIGVFLRLAIPSAVMTCLSWWSFEMIILLSGLLPNPELESSVLSVCFNTLTTVFTLACGIGSAGSTRVSNELGAGKPQAARIAAGAAIFLAVVEIIIVSMVLFALRHVFGYAFSSEKEVVDYVAVMAPLVCLSIIFDAIQGAISGVIRGCGWQRVGAYINLGAFYLCGNPAAIALGFWAHLGGRGMWIGILTGAFIQMFLLSIVMSRVNWNKQAEAARERIFDGKEENKYDEQIVSLAMADSPLLECIENSSETTWVSFFREVKVVGFLAAPLAAINLSQFLIQTGSLMLVGHLDELSLSSTAIAISLAAVTGFSVLIGMGSALETLCGQAYGAGQYRKFGNHIYTAIVCLLVVCLPITLLWINMGKLLVLIGQDPLISHEAGRFMIWLIPGLIAYAFLQPLVRYFQMQVLVTPMLVISCIISCLHIPLCWVLVYKTGLHNLGGALAMSISYWLNAVFLGLYMKFSPKCEKTHGAISMEVFKGIGVFIRFAIPSAVMTCLSWWSFELIILLSGFLPNPELESSVLSVCFNTLTTAFTLAYGIGSAGSTRVSNELGAGKPEAARKAAGAAIFLAVVEIIITSVVLFAVRHVFGYAFSSEKEVVDYVAVMAPLICISIIFDAIQGVISGIARGCGWQRIGAYINLGAFYLCGNIAAVALGFWTNLRGKGLWIGIQIGAFVQMLLLVIVLSHVNWKNQADEARERAFEGRCFVNKYEEQSV* 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16659404 16669107 - Chy10G183850.1 Chy10g01191 235566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01191 961 CDD MATE_eukaryotic 505 939 IPR045069 GO:0042910|GO:1990961
Chy10g01191 961 CDD MATE_eukaryotic 25 458 IPR045069 GO:0042910|GO:1990961
Chy10g01191 961 Pfam MatE 35 193 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy10g01191 961 Pfam MatE 515 675 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy10g01191 961 Pfam MatE 254 413 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy10g01191 961 Pfam MatE 736 893 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy10g01191 961 TIGRFAM matE: MATE efflux family protein 35 430 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy10g01191 961 TIGRFAM matE: MATE efflux family protein 515 912 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Chy10g01191 961 PANTHER MULTIDRUG RESISTANCE PROTEIN 504 942 - -
Chy10g01191 961 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 461 - -
Chy10g01191 961 PANTHER PROTEIN DETOXIFICATION 14 504 942 - -
Chy10g01191 961 PANTHER PROTEIN DETOXIFICATION 14 24 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01191 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101208050 904.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00932 Chy-Chr5:13981247 Chy10g01191 Chy-Chr10:16659404 3.07E-127 dispersed
Chy10g01191 Chy-Chr10:16659404 Chy10g01192 Chy-Chr10:16677304 0 tandem
Chy06g01161 Chy-Chr6:10276190 Chy10g01191 Chy-Chr10:16659404 4.76E-07 transposed
Chy09g00047 Chy-Chr9:415361 Chy10g01191 Chy-Chr10:16659404 3.60E-151 transposed
Chy12g00040 Chy-Chr12:315194 Chy10g01191 Chy-Chr10:16659404 1.73E-46 transposed
Chy10g01191 Chy-Chr10:16659404 Chy02g02325 Chy-Chr2:27242371 4.35E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy10g01191 Chy_Chr10 FPKM 15.94328 16.091032 21.340094 21.177765 19.048742 19.615726 20.579426 34.609459 33.748867 34.237247