Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01211 ATGAGAATATCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAGCAATAATCTCACTCCTGCTCCACAATCGGAGAAAACCAGAGCCAAACGCCGGAGAAGGAATCAAGACGAAACGAAATGTCAGATTCATAATCATAACGCCAATGAAACCAACAACCCCGCCGCTGCCGCCTCCGCCTCCGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAACATTCAGAACAAAAAAGGAAGGCAAGTTTATTTGGGAGCTTACGATAACGAGGAGGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAGTACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAGATGCGGAAAGTAACGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGTTTTTCGAGAGGTGTTTCTAAGTATCGCGGCGTCGCCCGTCACCACCACAACGGTCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTATATTTGGGAACTTACAACACACAAGAAGAAGCAGCAGCAGCATATGACATGGCAGCAATTGAATACAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAATCATCACTTCTTCAAGAAGAAGCAACACAACAAACAGATGATCCCAATTACTCCCCTGTTTCTTCTGAAGGAGAAGTAGTACAACAACAACAACAAGAGGATCAGCAGCAGCAGCAGCAACAACAACAAACAACATTCTCGAGCCCTCCCGACCTCCACTTCTCTATCGAGAACAACCCGGCAATGGTCATCATGGACGAACCACCAACACAAGATGACCACGATCTGCACTGGTCATTTTTAGACACGGGATTATTCGTGCAAGTCCCCGACCTCCCGCTTGAGAAATCAAGCGAATTGGCCGACCTGTACTTCGATGAGATTGGGTTCGAGGATGACATTGGAATGATGTTCGAAGCAAGCTTAGAGAACAATAACTGTGAGGCGAATAACAATGATAATAACAGTAGTAATAGTAATAAGAACAATAACAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGCGACAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1317 46.77 MRISSSSSSSSSSSSSCVGSDSGIHNSNNLTPAPQSEKTRAKRRRRNQDETKCQIHNHNANETNNPAAAASASASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSLLQEEATQQTDDPNYSPVSSEGEVVQQQQQEDQQQQQQQQQTTFSSPPDLHFSIENNPAMVIMDEPPTQDDHDLHWSFLDTGLFVQVPDLPLEKSSELADLYFDEIGFEDDIGMMFEASLENNNCEANNNDNNSSNSNKNNNNNNNNVGKMEVNCSDKIRLFSTTTSPSSSSITTSVSCEFRV* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16828954 16832932 + Chy10G184050.1 Chy10g01211 235586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01211 438 MobiDBLite consensus disorder prediction 57 81 - -
Chy10g01211 438 CDD AP2 183 244 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 SUPERFAMILY DNA-binding domain 81 150 IPR016177 GO:0003677
Chy10g01211 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 431 - -
Chy10g01211 438 SMART rav1_2 82 154 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 SMART rav1_2 184 248 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 SUPERFAMILY DNA-binding domain 183 244 IPR016177 GO:0003677
Chy10g01211 438 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Chy10g01211 438 MobiDBLite consensus disorder prediction 380 405 - -
Chy10g01211 438 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 7 431 - -
Chy10g01211 438 Gene3D AP2/ERF domain 183 244 IPR036955 GO:0003700|GO:0006355
Chy10g01211 438 Gene3D AP2/ERF domain 82 150 IPR036955 GO:0003700|GO:0006355
Chy10g01211 438 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 PRINTS Ethylene responsive element binding protein signature 224 244 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 MobiDBLite consensus disorder prediction 258 308 - -
Chy10g01211 438 MobiDBLite consensus disorder prediction 1 36 - -
Chy10g01211 438 ProSiteProfiles AP2/ERF domain profile. 82 148 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 MobiDBLite consensus disorder prediction 1 81 - -
Chy10g01211 438 MobiDBLite consensus disorder prediction 42 56 - -
Chy10g01211 438 ProSiteProfiles AP2/ERF domain profile. 184 242 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 MobiDBLite consensus disorder prediction 258 307 - -
Chy10g01211 438 CDD AP2 82 149 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 Pfam AP2 domain 82 140 IPR001471 GO:0003700|GO:0006355
Chy10g01211 438 Pfam AP2 domain 183 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01520 Chy-Chr4:21789647 Chy10g01211 Chy-Chr10:16828954 9.41E-72 dispersed
Chy04g01609 Chy-Chr4:22549547 Chy10g01211 Chy-Chr10:16828954 1.45E-60 dispersed
Chy10g01211 Chy-Chr10:16828954 Chy02g00817 Chy-Chr2:5154355 2.71E-86 dispersed
Chy10g01211 Chy-Chr10:16828954 Chy03g00967 Chy-Chr3:13208870 5.17E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18634 PF00847 AP2 8.70E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01211 - - csv:101206349 700.664