Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01212 ATGAACTCACTTCCCTTCATTTTCCTTCTCCTTCTCTCTCTCAACTTCGCCGGAGCTTCCGTTTCTCCTCTGTCTTCTACCGTCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCACCATCCGCTTCTCCCCTTCCGATCCATACAGCTACGGCAAATTTTCCGTCAAGCAATGTATCAAACAAGCGATCAAAATGTCGACAGTAATCGGTGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATAGGCCAGAGGCCGGCGCTCTGAGTGACTGCAGAGACCTCTCCGATTTGAATGTGGAATTTCTTCGGTCGATTGAGAGGGTACTGGAAGCAGCAGAGGGAGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGCATCGACGGATTGGTGGAATCGAGGAGTAGTCTGGGAAAAGCGCTATCGGGGCCGCTTTTGAGCGCTGGAGAGCTGTACAGTGTGTCGTTGGGATTGGTTTCGAACGCGATGTCGCGGAGGTGGAAGAAGCGTCGAGAGAAGGGAGGCGGAAACGGAGGAGTTCCGGGGTGTGGACGGAGCAGAGAGCCATTGGACACGCTGATCAAGGGACTACACAAAATGGAACCATGCAGCAACCAGTCCACAAAGTGCTTAGGAAGGAAGCGTTTGTTAACTGATTTAGGAAGCTCAGGAATTTTGATAAACAACACTGTGGTTGTTAGCCCAACCGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTCAAGGAAGGATACTACAAAGAATATGTCGTCGTCCCCAAATTCAAAACCAATATAATGCTCATCGGAGATGGCATTAACCGAACCATCATCACTGGAAACCACAACGTCGTTGATGGTTGGACAACTTATAATTCTTCTACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGATGTGACATTCAGGAACACAGCAGGACCCGAAAAGCACCAAGCAGTAGCATTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTCGAAGGATATCAAGACACTCTTTATGTACATTCCCTAAGACAATTCTACAGGGAATGTGATATTTATGGAACTGTAGACTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCAAGAAAACCACTCCCCAACCAAAAAAACGCATTCACCGCGCAGGGTCGAACCGATCCGAACCAAAACACAGGCATCTCAATCCACAACTGCACCATCAAGGCTGCACCCGACTGGGTGATGGATTCAAATACAACAACGACAAACTATCTCGGTCGGCCGTGGAAGCAGTACTCAAGGACAGTGTATATGCAATCTTATATTGGGGATTTGATAAGCCCAGTGGGGTGGTTGGAATGGAATGGAACAGTTGGATTGGAGACATTGTACTATGGAGAGTATGAGAATTATGGACCTGGAGCTAATACAAGTTTGAGAGTGAATTGGCCTGGATTTAGCTTGTTGAATGTTACACAAGCTATGAATTTTACTGTCTATAATTTCACCATGGGAGATACTTGGTTGCCTTATACTGATATCCCTTTCTCTGGAGGTTTGCTAATCAAGTAA 1698 46.7 MNSLPFIFLLLLSLNFAGASVSPLSSTVLCKSTLYPKLCRSILSTIRFSPSDPYSYGKFSVKQCIKQAIKMSTVIGDYLDRGRDSRLNRPEAGALSDCRDLSDLNVEFLRSIERVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGKALSGPLLSAGELYSVSLGLVSNAMSRRWKKRREKGGGNGGVPGCGRSREPLDTLIKGLHKMEPCSNQSTKCLGRKRLLTDLGSSGILINNTVVVSPTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVKEGYYKEYVVVPKFKTNIMLIGDGINRTIITGNHNVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVALRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCTIKAAPDWVMDSNTTTTNYLGRPWKQYSRTVYMQSYIGDLISPVGWLEWNGTVGLETLYYGEYENYGPGANTSLRVNWPGFSLLNVTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIK* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16839372 16844399 + Chy10G184060.1 Chy10g01212 235587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01212 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 6 562 - -
Chy10g01212 565 CDD PMEI-like_3 29 179 - -
Chy10g01212 565 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Chy10g01212 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Chy10g01212 565 PANTHER PECTINESTERASE 6 562 - -
Chy10g01212 565 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Chy10g01212 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 179 IPR035513 -
Chy10g01212 565 SMART PMEI_2 20 176 IPR006501 GO:0004857
Chy10g01212 565 Pfam Pectinesterase 249 548 IPR000070 GO:0030599|GO:0042545
Chy10g01212 565 SUPERFAMILY Pectin lyase-like 244 561 IPR011050 -
Chy10g01212 565 Gene3D - 243 562 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01721 Chy-Chr1:23002743 Chy10g01212 Chy-Chr10:16839372 1.55E-110 dispersed
Chy10g01212 Chy-Chr10:16839372 Chy01g01719 Chy-Chr1:22981477 1.23E-145 dispersed
Chy04g00215 Chy-Chr4:1957479 Chy10g01212 Chy-Chr10:16839372 5.41E-168 transposed
Chy10g00045 Chy-Chr10:1168764 Chy10g01212 Chy-Chr10:16839372 6.90E-13 transposed
Chy11g00104 Chy-Chr11:1190301 Chy10g01212 Chy-Chr10:16839372 5.71E-151 transposed
Chy10g01212 Chy-Chr10:16839372 Chy09g00837 Chy-Chr9:11150722 2.17E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01212 K01051 - csv:101206112 1070.46