Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01230 ATGGAAGCCCCTCCCGAAGGTTACCGCAAAAACGTTGGCATTTGCCTCATCAATCCGTCTAAAAAGATTTTTGCTGCCTCAAGGTTGGATATACCAGATGCCTGGCAAATGCCTCAGGGCGGCGTGGACGAGGGTGAAGATCCAAGAAGTGCAGCCATTAGAGAACTTAGAGAAGAAACAGGAGTCAAATCCGCAGACATTATTGCTGAAGTACCTTATTGGGTGACTTATGACTTCCCACCACATGTTCGGGAAAAACTTAGGCAGCAGTGGGGTTCTGACTGGAAGGGTCAAGCGCAAAAGTGGTTTCTGCTGAAGCTGACAGGAAGTGATGAAGAGATCAATCTTCTAGGTGATGGGACCGAGAAACCCGAGTTTGGCGAATGGTCATGGATGTCACCTGAAGATGTAGTAGAACGTGCTGTAGATTTCAAGAAACCTGTATACAAGGACGTGCTAACGGTATTCAAACCCCATCTCGAGTAA 486 47.33 MEAPPEGYRKNVGICLINPSKKIFAASRLDIPDAWQMPQGGVDEGEDPRSAAIRELREETGVKSADIIAEVPYWVTYDFPPHVREKLRQQWGSDWKGQAQKWFLLKLTGSDEEINLLGDGTEKPEFGEWSWMSPEDVVERAVDFKKPVYKDVLTVFKPHLE* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16945531 16947779 - Chy10G184240.1 Chy10g01230 235605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01230 161 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 160 - -
Chy10g01230 161 ProSitePatterns Nudix box signature. 40 61 IPR020084 GO:0016787
Chy10g01230 161 Pfam NUDIX domain 8 151 IPR000086 -
Chy10g01230 161 Hamap RNA pyrophosphohydrolase [rppH]. 2 161 IPR022927 -
Chy10g01230 161 PANTHER NUDIX HYDROLASE 26, CHLOROPLASTIC 1 160 - -
Chy10g01230 161 PRINTS NUDIX hydrolase family signature 49 64 IPR020476 -
Chy10g01230 161 PRINTS NUDIX hydrolase family signature 35 49 IPR020476 -
Chy10g01230 161 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 1 160 - -
Chy10g01230 161 SUPERFAMILY Nudix 7 159 IPR015797 -
Chy10g01230 161 ProSiteProfiles Nudix hydrolase domain profile. 7 154 IPR000086 -
Chy10g01230 161 CDD Ap4A_hydrolase_plant_like 7 156 IPR022927 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01230 - - - csv:101206740 339.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01865 Chy-Chr4:24832583 Chy10g01230 Chy-Chr10:16945531 2.51E-70 dispersed
Chy10g00146 Chy-Chr10:3890609 Chy10g01230 Chy-Chr10:16945531 1.55E-70 dispersed
Chy10g01230 Chy-Chr10:16945531 Chy01g00534 Chy-Chr1:3792696 8.12E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93