Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01254 ATGAGGGGTTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGTGTCACCAATGAGACTATTGCTTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCACGGCAACATTGTGAGGTTACAAGATGTAGTTCATAGCGAGAAGCGTCTGTATCTTGTTTTTGAGTACCTGGATTTGGATTTGAAGAAGCATATGGATTCATCTCCTGAATTTTCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTATCAAATTCTTTGTGGCATTGCATATTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTGCTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTGCTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGCATATTTGCTGAGATGGTTAATCAGCGACCGTTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGAATTGATCTTCTCTCTAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAATGCCCTTGAGCATGAATACTTCAAGGATGTTGGGTTTGTTCCCTAA 885 43.73 MRGYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARNALEHEYFKDVGFVP* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17096948 17105026 - Chy10G184480.1 Chy10g01254 235629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01254 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Chy10g01254 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Chy10g01254 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Chy10g01254 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy10g01254 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy10g01254 294 PANTHER CELL DIVISION PROTEIN KINASE 3 291 - -
Chy10g01254 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy10g01254 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Chy10g01254 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Chy10g01254 294 SUPERFAMILY Protein kinase-like (PK-like) 2 290 IPR011009 -
Chy10g01254 294 PANTHER - 3 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02329 Chy-Chr2:27266747 Chy10g01254 Chy-Chr10:17096948 1.35E-89 dispersed
Chy03g00816 Chy-Chr3:11340248 Chy10g01254 Chy-Chr10:17096948 3.38E-11 dispersed
Chy06g02196 Chy-Chr6:26189382 Chy10g01254 Chy-Chr10:17096948 1.97E-67 dispersed
Chy08g00540 Chy-Chr8:12919239 Chy10g01254 Chy-Chr10:17096948 1.34E-117 dispersed
Chy10g01254 Chy-Chr10:17096948 Chy04g01449 Chy-Chr4:21132250 1.32E-86 dispersed
Chy11g01761 Chy-Chr11:24003985 Chy10g01254 Chy-Chr10:17096948 5.39E-10 dispersed
Chy10g01254 Chy-Chr10:17096948 Chy10g00800 Chy-Chr10:14033232 1.32E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71522 PF00069 Pkinase 2.20E-80 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01254 K02206 - csv:116405161 585.874