Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01271 ATGGGTCCTCGGCATGGGCTTTTTCTTCTCTCTTGTTGGTCCAATAGGCCCAAAGGGCTTCTCGAATTATGCATAAGATCATCTTCTCTTCCCTTCCGGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCTCTAAACTGGTGATGAGGAACTTTACCGATCTACATCGACGTTCTTCCGTGAAGGCAGTGTCTGGCTCTACATCAAGTGCCGAAACGACTGGTGCAGAAGTGGACGATGCTGAGGAAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTACTGACATATAGGCATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTCCGCAGCATTGGAGTAAGAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACTTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTTGACCTACGACTAAGATTACCGGCTGTTGTAAGCAAATTACATAAAGCCATAAACCGAAATGGTGGAGTGACTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGATGGCGTATATGTTTTGGGTTCAAGGCTACCAACTCAACGAGGCGCTAGAATTACTGCTGAGCAAACGATCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACTGCCGACATTCTTTCAGGATTTAAAAAGAAGCCTGTCGCTTTATCTTGGGAAGATAATCAATGCTCAACTGTAGAAGTAGCTGGACTTGATATTGGATGGGGTCAGAGGATTCCATTAAAATTCGACAAGGCACGAGGTGCATGGATTCTCAATAGGGAACTCGCGGAAGGACGATATGAATACAAGTATATTATCGATGGTATATGGACGTGCAATGAAAAGGAGCCCATCACTCCACCCAACCAAGATGGCCACGTCAACAATTTCATTGAAGTTATTGAAGATGAGGATCCAGGTAGTGATAGAGCAATTCTTCGGAGAAGGTTAATTGGAGATGAACCAGAACTCACGGCTGAAGAAAGAAGCAAAATAAGACAATTTCTTGAAGCTTGTCCTGATGAAATTTGA 1194 42.71 MGPRHGLFLLSCWSNRPKGLLELCIRSSSLPFRSFKCRQRKPEFQLSKLVMRNFTDLHRRSSVKAVSGSTSSAETTGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVRTVFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVTYIHCTAGLGRAPAVAMAYMFWVQGYQLNEALELLLSKRSCFPKIDAIKSATADILSGFKKKPVALSWEDNQCSTVEVAGLDIGWGQRIPLKFDKARGAWILNRELAEGRYEYKYIIDGIWTCNEKEPITPPNQDGHVNNFIEVIEDEDPGSDRAILRRRLIGDEPELTAEERSKIRQFLEACPDEI* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17246198 17253549 + Chy10G184650.1 Chy10g01271 235646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01271 397 Pfam Glycogen recognition site of AMP-activated protein kinase 273 357 IPR032640 -
Chy10g01271 397 SMART dsp_5 114 264 IPR020422 GO:0006470|GO:0008138
Chy10g01271 397 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 111 256 IPR029021 -
Chy10g01271 397 Pfam Dual specificity phosphatase, catalytic domain 171 252 IPR000340 GO:0008138|GO:0016311
Chy10g01271 397 CDD DSP_laforin-like 113 260 IPR045204 GO:0019203|GO:0046838
Chy10g01271 397 Gene3D Protein tyrosine phosphatase superfamily 107 389 IPR029021 -
Chy10g01271 397 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 24 396 - -
Chy10g01271 397 SUPERFAMILY E set domains 272 354 IPR014756 -
Chy10g01271 397 MobiDBLite consensus disorder prediction 65 90 - -
Chy10g01271 397 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 271 IPR020422 GO:0006470|GO:0008138
Chy10g01271 397 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 24 396 IPR030079 GO:0005982|GO:0007623|GO:0019203
Chy10g01271 397 CDD E_set_AMPKbeta_like_N 273 354 - -
Chy10g01271 397 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 191 249 IPR000387 GO:0016311|GO:0016791
Chy10g01271 397 Gene3D Immunoglobulins 269 361 IPR013783 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01457 Chy-Chr4:21205710 Chy10g01271 Chy-Chr10:17246198 1.19E-29 dispersed
Chy10g00338 Chy-Chr10:8582992 Chy10g01271 Chy-Chr10:17246198 1.77E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01271 - - csv:101212390 714.146