Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01271 ATGGGTCCTCGGCATGGGCTTTTTCTTCTCTCTTGTTGGTCCAATAGGCCCAAAGGGCTTCTCGAATTATGCATAAGATCATCTTCTCTTCCCTTCCGGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCTCTAAACTGGTGATGAGGAACTTTACCGATCTACATCGACGTTCTTCCGTGAAGGCAGTGTCTGGCTCTACATCAAGTGCCGAAACGACTGGTGCAGAAGTGGACGATGCTGAGGAAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGTGCTGTACTGACATATAGGCATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAAGATGTTGACAAGCTCCGCAGCATTGGAGTAAGAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTAGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACTTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTTGACCTACGACTAAGATTACCGGCTGTTGTAAGCAAATTACATAAAGCCATAAACCGAAATGGTGGAGTGACTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGATGGCGTATATGTTTTGGGTTCAAGGCTACCAACTCAACGAGGCGCTAGAATTACTGCTGAGCAAACGATCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACTGCCGACATTCTTTCAGGATTTAAAAAGAAGCCTGTCGCTTTATCTTGGGAAGATAATCAATGCTCAACTGTAGAAGTAGCTGGACTTGATATTGGATGGGGTCAGAGGATTCCATTAAAATTCGACAAGGCACGAGGTGCATGGATTCTCAATAGGGAACTCGCGGAAGGACGATATGAATACAAGTATATTATCGATGGTATATGGACGTGCAATGAAAAGGAGCCCATCACTCCACCCAACCAAGATGGCCACGTCAACAATTTCATTGAAGTTATTGAAGATGAGGATCCAGGTAGTGATAGAGCAATTCTTCGGAGAAGGTTAATTGGAGATGAACCAGAACTCACGGCTGAAGAAAGAAGCAAAATAAGACAATTTCTTGAAGCTTGTCCTGATGAAATTTGA 1194 42.71 MGPRHGLFLLSCWSNRPKGLLELCIRSSSLPFRSFKCRQRKPEFQLSKLVMRNFTDLHRRSSVKAVSGSTSSAETTGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVRTVFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVTYIHCTAGLGRAPAVAMAYMFWVQGYQLNEALELLLSKRSCFPKIDAIKSATADILSGFKKKPVALSWEDNQCSTVEVAGLDIGWGQRIPLKFDKARGAWILNRELAEGRYEYKYIIDGIWTCNEKEPITPPNQDGHVNNFIEVIEDEDPGSDRAILRRRLIGDEPELTAEERSKIRQFLEACPDEI* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17246198 17253549 + Chy10G184650.1 Chy10g01271 235646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01271 397 Pfam Glycogen recognition site of AMP-activated protein kinase 273 357 IPR032640 -
Chy10g01271 397 SMART dsp_5 114 264 IPR020422 GO:0006470|GO:0008138
Chy10g01271 397 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 111 256 IPR029021 -
Chy10g01271 397 Pfam Dual specificity phosphatase, catalytic domain 171 252 IPR000340 GO:0008138|GO:0016311
Chy10g01271 397 CDD DSP_laforin-like 113 260 IPR045204 GO:0019203|GO:0046838
Chy10g01271 397 Gene3D Protein tyrosine phosphatase superfamily 107 389 IPR029021 -
Chy10g01271 397 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 24 396 - -
Chy10g01271 397 SUPERFAMILY E set domains 272 354 IPR014756 -
Chy10g01271 397 MobiDBLite consensus disorder prediction 65 90 - -
Chy10g01271 397 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 271 IPR020422 GO:0006470|GO:0008138
Chy10g01271 397 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 24 396 IPR030079 GO:0005982|GO:0007623|GO:0019203
Chy10g01271 397 CDD E_set_AMPKbeta_like_N 273 354 - -
Chy10g01271 397 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 191 249 IPR000387 GO:0016311|GO:0016791
Chy10g01271 397 Gene3D Immunoglobulins 269 361 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01271 - - - csv:101212390 714.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01457 Chy-Chr4:21205710 Chy10g01271 Chy-Chr10:17246198 1.19E-29 dispersed
Chy10g00338 Chy-Chr10:8582992 Chy10g01271 Chy-Chr10:17246198 1.77E-46 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005805 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 0 37