Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01285 ATGTTTCCTCGTGTTCTTACCACCCTCTTCATATGGATGGTTGCTTCTTCAATCTCTTGTGTCTCTTCGTCTTCTTTCAATCTTACATTACCCCATCAACATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCCGTATGGAGAAGACAAATGCTGTCCATCGAATCAAAGGATCAAACATTCTCTTGTCTCACCGGAAACCCCATCGACGATTGCTGGCGGTGCGACCCAAATTGGGCAGCTAACCGCCAGCGACTGGCCGACTGTGGTATAGGGTTCGGGCGCGACGCCATGGGCGGCAAAGGTGGAAAGATCTACATCGTTACCGACTCGTCCGATTTGGATCCGGCGAACCCAACTCCGGGAACTCTCCGGCACGCTGTGATCCAATTCGAACCACTGTGGATCATATTCTCCGCCGACATGACTATAAGGCTGAAATACGAACTTATCATCAACAGTTTTAAAACGATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGGGGATGTATCACCATTCAATACGTGTCGAATGTCATCATCCACAACGTCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAATATAAGATCGACTCCAACTCACGTGGGTCATCGAGGACTATCGGATGGAGATGGGATTTCAATATTTAGCTCGAGAAAGATATGGATCGACCACTGTTCATTGTCGTATTGTACCGATGGATTAATAGATGCAATAATGGGTTCGACGGGAATAACGATATCAAACAGCTACTTCTCCCACCATGACGAGGTGATGTTGTTGGGACACGATGATCGATATGTGCAAGACTCGGGGATGCAAGTCACCATCGCCTTCAACCATTTTGGCGAGGCGTTGGTTCAACGCATGCCTCGATGTAGACATGGCTATATCCATGTCGTCAACAATGACTTCACTGCTTGGCAAATGTACGCCATTGGAGGTAGCGCTCAACCCACTATTAACAGTCAGGGTAATCGTTACACCGCTCCTGTGGACCCTAATGCCAAGGAGGTGACGAGACGTTTGGACGCGGCGGAGACAGACTGGGCGGGGTGGAACTGGCGGACGGACGGCGATATTTTGGTGAACGGTGCGTTTTTTGTACCGTCCGGTGCCGGACTAAGCACCCAGTATGGTAAGGCATCCAGCGTGGAGCCTAAGTCGGTGGCTCTCATCAATCAACTCACTATGAACGCCGGCGTCTTGGGCGCTCCCAGGTATAATGGCGGTGAAGGAATTGTCTATCCAGGATTTAGCGGCGAAAATGGTGGAAATGGTGATGAGGGATATGGGGGTATTGTTTTTTCTTCCTCTTTTTGTTTGCGAGTATATGCCTCATTTTGGTAA 1380 49.93 MFPRVLTTLFIWMVASSISCVSSSSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSIESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIRLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNVHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWQMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETDWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNGGEGIVYPGFSGENGGNGDEGYGGIVFSSSFCLRVYASFW* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17374876 17379576 + Chy10G184790.1 Chy10g01285 235660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Chy10g01285 459 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Chy10g01285 459 SMART amb_all 147 344 IPR002022 -
Chy10g01285 459 Pfam Pectate lyase 156 336 IPR002022 -
Chy10g01285 459 PANTHER PECTATE LYASE 18-RELATED 7 426 IPR045032 GO:0030570
Chy10g01285 459 SUPERFAMILY Pectin lyase-like 62 391 IPR011050 -
Chy10g01285 459 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Chy10g01285 459 Gene3D - 72 414 IPR012334 -
Chy10g01285 459 PANTHER PECTATE LYASE 7 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00873 Chy-Chr8:16159387 Chy10g01285 Chy-Chr10:17374876 0 dispersed
Chy09g00385 Chy-Chr9:3383806 Chy10g01285 Chy-Chr10:17374876 3.52E-175 dispersed
Chy10g01285 Chy-Chr10:17374876 Chy12g01211 Chy-Chr12:16852088 9.44E-179 dispersed
Chy10g01285 Chy-Chr10:17374876 Chy06g00395 Chy-Chr6:2675533 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01285 K01728 - csv:101205739 896.73