Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01301 ATGGGTCCGTCGGAGAAAGATATGGTGGTGAATCAACTGCCGGAGTCTGTGAGGGAGATTTCAGGGCTTCCTGAGTGTAACGGTATCTGTAAGAAGATGTATGGGGACCTGATTCGAAGAGTCAAACTATTGAGCCCTCTGTTTGAAGAATTAAGAGATGGGGAAGAAGAAGTTGAGTTGGATGTTCTTAAGGGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCTATTGAGCTTCTTAAGTCGGTCAGCCAAGGTAGCAAGCTATTTCAGGCTTCGCAGTCGGAAAAGATTGGACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATCGACAAGCTCGGGATCTCGGACGAGGTTCGAGAACAGACTGAACTTGTTAATGCGCAATTCAAACGAGCAAAAGAGCGAGTAAATTTAGCCGATACACAACTAGACAAGGATTTAGCTATATTACAAGAAGAAAAAGATCCTGACCCTGCAGTATTGAAGAGACTTTCTGAAAAGCTGCATCTTCGAACGATAAACGAGCTGAAGAAAGAGTCACTAGCGATCCACGAGTTGGTGATCTCGAGTGATGGAGACCCTGAGGATGTTTTTGGTAAAATGTCGTCCATTTTAAAGAAGCTAAAGGATTTTGTACAATCAGAAAACCCGGAAGTTGAAACTTCTCAAGACGAAAAAACTACAACCATTAAACACAGATCTCCCGTCATCCCCGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCAGTCATCGTTTCCACCGGGCAGACATATGAGAGATCTTGCATTCAGAAATGGTTGGATGCGGGGCACAAAACTTGTCCAAAATCTCAGCAAGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTGTGGTGCGAGAACAATGGTGTTGAGCTGCCAAAGAAGCAAGGTAGCTGTAGAAACAAGAAAGCCGGAAACAATGTTTCAGACTGTGATCGGTCAGCCATCGATGCGTTACTAGTAAAATTGGTAAATGGATCGCCGGAACAAAAAAGATCAGCTGCAGGTGAACTCCGGTTACTAGCGAAGAGGAATTCAGATAACAGAATTTGTATTGCTGAGGCAGGAGCTATTCCGTTCCTTGTTGAACTATTATCCTCAAATGACACTAGGACCCAGGAGCATGCAGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACCATTGTCGATTTACGAGCCATTCCCGCTGTAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTAATTGACGAGAACAAGGTTGCAATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTACTTTGCTTCGAGAAGGTACACCGAGAGGAAAGAAAGATGCTGCCACTGCTATTTTCAATTTATCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGAATTGTGAATCCACTTATGGGATTTCTAAAAGATGCTGGAGGTGGAATGGTGGATGAAGCTCTAGCCATTCTAGCAATTCTTGCAACTCACCATGAAGGGAAAATAGCAATAGGGGAAGCTGAGCCAATGACGATTCTGTTGGAGTTCATCAGAACAGGCTCTCCACGAAACCGGGAGAACGCTGCTGCAGTGCTGTGGTCACTTTGTAGTACAGATTTCGAGCAGTTGAAGCTAGCTAGAGAACATGGAGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGCACAGAGAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTGTTTCAACGTTTTGATAAACCATCACCTAATCTATAA 1884 43.31 MGPSEKDMVVNQLPESVREISGLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEVELDVLKGLELLKIALDSAIELLKSVSQGSKLFQASQSEKIGLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVNAQFKRAKERVNLADTQLDKDLAILQEEKDPDPAVLKRLSEKLHLRTINELKKESLAIHELVISSDGDPEDVFGKMSSILKKLKDFVQSENPEVETSQDEKTTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALLHTALTPNYVLKSLIALWCENNGVELPKKQGSCRNKKAGNNVSDCDRSAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAVVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALITLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKIAIGEAEPMTILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTERAKRKAGSILELFQRFDKPSPNL* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17453715 17456240 - Chy10G184950.1 Chy10g01301 235676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01301 627 Gene3D - 9 120 IPR036537 GO:0007166
Chy10g01301 627 Gene3D - 334 417 IPR011989 -
Chy10g01301 627 CDD RING-Ubox_PUB 250 292 IPR045210 -
Chy10g01301 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Chy10g01301 627 SMART arm_5 537 577 IPR000225 GO:0005515
Chy10g01301 627 SMART arm_5 455 495 IPR000225 GO:0005515
Chy10g01301 627 SMART arm_5 496 536 IPR000225 GO:0005515
Chy10g01301 627 SMART arm_5 414 454 IPR000225 GO:0005515
Chy10g01301 627 SMART arm_5 373 413 IPR000225 GO:0005515
Chy10g01301 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Chy10g01301 627 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 9 621 - -
Chy10g01301 627 SUPERFAMILY RING/U-box 244 321 - -
Chy10g01301 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Chy10g01301 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Chy10g01301 627 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Chy10g01301 627 Pfam Armadillo/beta-catenin-like repeat 414 453 IPR000225 GO:0005515
Chy10g01301 627 PANTHER U BOX DOMAIN-CONTAINING 9 621 - -
Chy10g01301 627 Gene3D - 521 624 IPR011989 -
Chy10g01301 627 SUPERFAMILY ARM repeat 340 617 IPR016024 -
Chy10g01301 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Chy10g01301 627 Gene3D - 418 520 IPR011989 -
Chy10g01301 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Chy10g01301 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
Chy10g01301 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00730 Chy-Chr5:9934829 Chy10g01301 Chy-Chr10:17453715 6.81E-62 dispersed
Chy09g00867 Chy-Chr9:11403672 Chy10g01301 Chy-Chr10:17453715 6.30E-129 dispersed
Chy10g00794 Chy-Chr10:13997370 Chy10g01301 Chy-Chr10:17453715 2.79E-44 dispersed
Chy10g01301 Chy-Chr10:17453715 Chy11g01242 Chy-Chr11:18538898 0 dispersed
Chy10g01301 Chy-Chr10:17453715 Chy12g00185 Chy-Chr12:2245357 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01301 - - csv:101221065 1153.27