Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01323 ATGGCCAAAGACGACGTTACGGCGGCAAGAGGGTTCTCCGGCAAGGACTACCACGACCCTCCTCCGGCCCCGCTCTTCGACGCGGAGGAGCTCTGCAAGTGGTCCTTTTACAGAGCCATCATTGCTGAGTTCATTGCCACTCTTCTTTTTCTCTATGTAGTGATCTTGACTATCATCGGCTACAACAGCCAGACCGATACCGACAAGCCCGGCACCAACGCTTGCGATGGCGTTGGCATTCTCGGCATCGCTTGGTCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCTGGCATTTCAGGAGGGCACATAAACCCGGCGGTGACGTTCGGGCTGTTCTTGGCTCGTAGAGTGTCATTGGTGCGAGCAGTAGCGTACATGGTGGCTCAGTGTTTAGGGGCCGTGTGCGGTGCGGGGCTAGTAAAAGCCTTCCAAAAAGGTTACTACAACAAGTACGGTGGCGGTGCGAACCAACTCGCCCATGGCTACTCCAAAGGCACCGGCTTGGGAGCTGAAATCGTTGGTACCTTTATCTTGGTTTACACCGTTTTCTCCGCCACCGATTCCAAGAGAAATGCCAGAGACTCCCATGTTCCTGTATTGGTTCCACTCCCCATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATCACCGGCACAAGCATCAACCCCGCAAGAAGCTTCGGCCCTGCTGTTATCTTGAATAGGGAAAAACCTTGGGATGACCATTGGATATTCTGGGTTGGGCCATTTGTGGGGGCGGCCATCGCAGCGTTCTACCACCAGTTCATCTTGAGGGCGGGCGCGGCCAAAGCTCTGGGCTCTTTCAGGAGCAACCCCTCCGTCTGA 864 55.09 MAKDDVTAARGFSGKDYHDPPPAPLFDAEELCKWSFYRAIIAEFIATLLFLYVVILTIIGYNSQTDTDKPGTNACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARRVSLVRAVAYMVAQCLGAVCGAGLVKAFQKGYYNKYGGGANQLAHGYSKGTGLGAEIVGTFILVYTVFSATDSKRNARDSHVPVLVPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNREKPWDDHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSNPSV* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17592391 17595917 + Chy10G185170.1 Chy10g01323 235698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01323 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 PANTHER AQUAPORIN PIP2-4-RELATED 10 284 - -
Chy10g01323 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Chy10g01323 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Chy10g01323 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 284 IPR034294 -
Chy10g01323 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Chy10g01323 287 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy10g01323 287 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g00960 Chy10g01323 CCT
Chy03g00960 Chy10g01323 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00518 Chy-Chr8:12405477 Chy10g01323 Chy-Chr10:17592391 6.13E-13 dispersed
Chy01g00675 Chy-Chr1:4879412 Chy10g01323 Chy-Chr10:17592391 7.86E-156 transposed
Chy10g01323 Chy-Chr10:17592391 Chy11g00808 Chy-Chr11:11587712 4.45E-162 wgd
Chy10g01323 Chy-Chr10:17592391 Chy03g00960 Chy-Chr3:13152706 5.04E-144 wgd
Chy10g01323 Chy-Chr10:17592391 Chy04g02069 Chy-Chr4:26182920 2.23E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01323 K09872 - csv:101204956 563.148