Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01343 ATGGACCGGCAAAGATCTCCGGTATTCTGTCCGGAGAACGAAGACCTTGCCGACTTCATGTGGCAGAAGCGGCTAGAAATGGCGGCGACACCTAAAGGAATCTCTGACAAAGTCGATATGACTCTGTATAAAGCTTATTTGAATGTTTGCAACTCTAAGGTCTCCATTACGTCCATGAAGGATCTCTCTCAGATCAAAGGCGTAGGGAAGTGGATTCTTAAACAAGTACAAGGTTTTTTTAAGAGTGGTTCTGAAGGTTCTGGACCCGAGGAATTGGCGGGAAAAGGTAAGAAAATAAAGGGGACCAGGCGCTATATTCCACAGAAGAACTCGGTTGCATATGCCTTATTGATCACTCTTTATAGGGGTACAACAAATGAGAATGAATACATGCGTAAGCAGGAGCTTATTGATGCAGCTGAAGCAAGTGGTCTTTCTAGGGTGGCGATTGCGCCAGAGAAGGGTAAAGGAAAACCTAGTCAATTTGGAAGCTCTTCGAGGGATTGGTACAGTGGATGGAGCTGCATGAAGACATTGATATCAAGGGGATTGGTGGTGAAATCTAATTGCCCAGCAAAATACATGCTTACAGAGGAGGGGCAGCAAGTGGCACGTGAATGTCTTATGAGATCTGGACTGTTAAGTTCTTCAAAGAACTTTGATAACACAAAAGGATCCTCTATTCTCGAATCATGTGATATATCTAATCACAGTGCTAATTATCTTGATTCAGATGTAGAAGTGACTTCACCATCTGTTAGTCAGAGTACTAAGCACAAATCAACTGATGTGCCCCTTGAATCACTTGAGAGGTTTATGCGCATGGGTTACTCTAAGCATCAAGTTATTAATTCCTTTAAAGAAGTTTCAAAGGATAATCCAAACAAGGATATCTCATCACTTTGGCCAGCAGTTTTATGTCGTCTACGCGAAGATCTTGTTTATGGTCAAGTAGAAGCAGTTGGAAGAGAAAATAGGTCAATGGGTTCTTCTCATGAGGGGAGTGAGCCAAAGAATGTTGTTAAAGTTAATGGGGAGAGATCTTTTAGCTCGAGAGCTTGCTCATCATCTAATCCTTCCATCATTGAATCCCGTAGAGATAGTGTCAAAGGAAATACAAACATCTTGAGCATGCCACCTTTGAGCTTTGGTGAAAAATTTGAAGATTGTTATAACGTAGTCCTGATATTGGACGATCGAGAACAGTTTGCCAAGCACAGTTCTCGGTCTAGGAGAATGATTGAGAATATCTGTAGCCAATTCAAGATTCAGATTGAGATTAGGAGGCTGCCTGTTGGTGATGGAATCTGGATAGCCCGCCATAAACATCTTGATAATGAATATGTTCTTGATTTTATTGTTGAGAGGAAAGATGTTGATGATTTGCGGTGCTCAATCAGGGACAATCGCTACAGAGACCAGAAATTAAAACTTCTGAGATGTGGTCTTAAAAGAATGATATATCTTGTGGAAGGTGATCCCAATTCATCTGAAGCGGCAGAAAGCATCAAAACAGCTTGCTTTACAACAGAGATTTTAGAGGGATTTGATGTGCAAAGAACCAGTGGCTTGTCAGATACACTAAAGAAGTATGGTTATCTTACTCATGCAATTACACAATACTACATATTACAGGCATCTGATGATCGTGTTAGTCATTCTGATGTCTGTCCTCGTTTCGATCAATTTATAAAAAAATGCCAAGAATTGGATAAGAGGACGGTTAGTGATGTTTTTGCACTTCAGCTCATGCAGGTCCCACAGGTTACGGAGGAGGTTGCTGTTGCTGTTTTGGATTTGTACCCCACTCTTCTATCACTTGCCCGAGCGTACTCTCTTTTAGACGGTAATGTTACTGAACAAGAAGAGATGTTAAGGAGACAGAGCAACAATTTGATCAATGCAGGTACTTCAATGGCAGGAATGTTTAATGGGGAGGGTTCATCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCGTGGTCGTTATCACCCGGTATAGGATCGCCATACCCTTTTCTAAGAGAACTCAAATCTGAAGAGAGGGGCTTGTGTTTGATTCACCTACTTCTTAGCTGCGCCAACCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTCGAGCAAATTTCCCACCTTGCTTCGCCAGACGGGGACACAATGCAGCGGATTGCTGCTTACTTCACCGAGGCACTCGCGGATCGAATACTTAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATTTTGTCAGTCCCTGAAGAGATTCTTGCCCAGAGATTGTTCTTTGAATTGTGTCCTTTCTTGAAGCTTGCATATGTGATGACTAACCAGGCTATTATAGAAGCCATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACCTGAGAATAACTGGAATTCATGAACAAAAGGAAGTGTTGGAACAAATGGCTCTTCGGCTTACAGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTCAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAGGGTTAAGACAGGTGAAGCACTTGCAGTTAGCTCTGTTCTTGAACTTCATTCGGTTTTGGCTACAGATGACGATAAGAAAACGTCGCCACCTGCATTAAAAAATTTGCAAAAATTCCTACGTAGGAAGCAGCGAACACTAGGAGAATGGCTTGAGACAGATTCGTTGCAAGTTTTTAGTAGCCCGGATTCAGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCATTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAGCAAGAATCAAACCTGAATGGATCTGCTTTCATGGAAAGAGTACTAGAAGCATTGAACTTCTATGCTGCATTGTTTGATTGCTTAGAGTCAACTGTGTCACGATCATCGATCGAACGACAAAGGGTCGAGAAAATGCTTTTGGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGCAGAGAGGACGGAAAGGCATGAAAAGCTAGAGAAATGGATGCTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTACCATAGTATGTTATTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGACTTGAGCTTATAGGCCCGATGGAGGGTACCATTGCTGAAGAACTTTATTCCGAGAGTTTGCAGTTAACACAGTCAAAATTGGGTGATATTTCATTATCTGATTACAAAAAAGATCGGCCATCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGATGGATCTTTATGGGGTGGCTCTGATGAAGGCTTGGAGGAAACAGCTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGTGATGGTTTAGTTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATATTGGCTTCAAGCAGTCAGTCTCTGTTGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCCTTCCTGCTGACTTCAAAGAGAAGCTAGCTGGAATTCCCGAGAACCAAAGTAAATTCCAAAGCTTGTATGAATCTTTGAACTCCCTTTCGACAGTAGATGCGCTTAGTCTATTCAATGGGGATATTACGACACACCGCACAAAAGAAGCGTTTGTCAGTGCAAATACAAATTCGCAAACCATGGATTTATTGAAGGAAAATCCAGATTATGGTCGTCTAGGAAAGTTCTATGAAGAGCTTGCAGCACTTTTACCACAATCGCCTGCTCTGAATGTTCATTTACATTTGCTGTAA 3900 42.23 MDRQRSPVFCPENEDLADFMWQKRLEMAATPKGISDKVDMTLYKAYLNVCNSKVSITSMKDLSQIKGVGKWILKQVQGFFKSGSEGSGPEELAGKGKKIKGTRRYIPQKNSVAYALLITLYRGTTNENEYMRKQELIDAAEASGLSRVAIAPEKGKGKPSQFGSSSRDWYSGWSCMKTLISRGLVVKSNCPAKYMLTEEGQQVARECLMRSGLLSSSKNFDNTKGSSILESCDISNHSANYLDSDVEVTSPSVSQSTKHKSTDVPLESLERFMRMGYSKHQVINSFKEVSKDNPNKDISSLWPAVLCRLREDLVYGQVEAVGRENRSMGSSHEGSEPKNVVKVNGERSFSSRACSSSNPSIIESRRDSVKGNTNILSMPPLSFGEKFEDCYNVVLILDDREQFAKHSSRSRRMIENICSQFKIQIEIRRLPVGDGIWIARHKHLDNEYVLDFIVERKDVDDLRCSIRDNRYRDQKLKLLRCGLKRMIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSGLSDTLKKYGYLTHAITQYYILQASDDRVSHSDVCPRFDQFIKKCQELDKRTVSDVFALQLMQVPQVTEEVAVAVLDLYPTLLSLARAYSLLDGNVTEQEEMLRRQSNNLINAGTSMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLSCANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVMTNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHSVLATDDDKKTSPPALKNLQKFLRRKQRTLGEWLETDSLQVFSSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERTERHEKLEKWMLRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGLELIGPMEGTIAEELYSESLQLTQSKLGDISLSDYKKDRPSGSGVDDSCEDDGSLWGGSDEGLEETADLDREWQRRHDQFHTIGYRDGLVAGKEAAAQEGFNIGFKQSVSVGYKLGLVRGVSSVLASLPADFKEKLAGIPENQSKFQSLYESLNSLSTVDALSLFNGDITTHRTKEAFVSANTNSQTMDLLKENPDYGRLGKFYEELAALLPQSPALNVHLHLL* 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17711281 17729927 + Chy10G185370.1 Chy10g01343 235718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01343 1299 Pfam Essential protein Yae1, N terminal 1159 1196 IPR019191 -
Chy10g01343 1299 SMART ERCC4_2 394 494 IPR006166 GO:0003677|GO:0004518
Chy10g01343 1299 Gene3D - 97 219 IPR036388 -
Chy10g01343 1299 Gene3D - 573 640 IPR042530 -
Chy10g01343 1299 MobiDBLite consensus disorder prediction 1111 1137 - -
Chy10g01343 1299 Pfam GRAS domain family 686 1077 IPR005202 -
Chy10g01343 1299 Gene3D - 388 536 - -
Chy10g01343 1299 ProSiteProfiles GRAS family profile. 677 1111 IPR005202 -
Chy10g01343 1299 PANTHER CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 10 638 IPR033309 GO:0000737|GO:0006302|GO:0008821
Chy10g01343 1299 SUPERFAMILY Restriction endonuclease-like 391 536 IPR011335 -
Chy10g01343 1299 Pfam ERCC4 domain 398 528 IPR006166 GO:0003677|GO:0004518
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01343 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-] - csv:101219408 1181.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01488 Chy-Chr2:12245861 Chy10g01343 Chy-Chr10:17711281 0 dispersed
Chy10g01343 Chy-Chr10:17711281 Chy03g00094 Chy-Chr3:912130 2.50E-63 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g02153 . 74 752 GRAS Transcription Factor Family AT2G37650 54.0 7.9e-199 690.6
Chy12g00215 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 9.1e-126 447.6
Chy02g00853 . 21 441 GRAS Transcription Factor Family AT3G49950 60.4 6.5e-137 484.2
Chy07g01075 . 39 438 GRAS Transcription Factor Family AT5G41920 67.5 1.3e-148 523.1
Chy08g00536 . 462 838 GRAS Transcription Factor Family AT5G41920 56.6 3.1e-115 412.1
Chy02g00656 CCT 1 610 GRAS Transcription Factor Family AT5G66770 58.8 3.5e-184 641.7
Chy07g01294 CCT 8 538 GRAS Transcription Factor Family AT5G66770 58.5 4.9e-162 568.2
Chy11g00700 . 57 546 GRAS Transcription Factor Family AT1G50600 59.6 8.9e-163 570.5
Chy06g01877 . 46 544 GRAS Transcription Factor Family AT1G50600 57.1 3.9e-158 555.1
Chy02g00456 . 103 542 GRAS Transcription Factor Family AT1G50600 55.6 6.2e-140 494.6
Chy04g01026 . 203 594 GRAS Transcription Factor Family AT1G50600 57.7 5.6e-133 471.5
Chy09g00844 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.4e-208 722.6
Chy09g00488 . 53 600 GRAS Transcription Factor Family AT1G14920 61.1 5.1e-182 634.4
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 4.5e-154 541.6
Chy06g01964 . 2 259 GRAS Transcription Factor Family AT1G55580 55.8 1.4e-79 293.9
Chy09g00488 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 1.9e-181 632.5
Chy09g00844 . 1 579 GRAS Transcription Factor Family AT1G66350 56.8 4.1e-173 604.7
Chy06g01359 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 2.7e-156 548.9
Chy11g00700 . 19 546 GRAS Transcription Factor Family AT5G48150 65.7 3.1e-194 674.9
Chy06g01877 . 19 544 GRAS Transcription Factor Family AT5G48150 57.4 2.5e-167 585.5
Chy02g00456 . 15 542 GRAS Transcription Factor Family AT5G48150 51.7 2.0e-148 522.7
Chy04g01026 . 103 594 GRAS Transcription Factor Family AT5G48150 51.0 3.5e-137 485.3
Chy09g00844 . 46 578 GRAS Transcription Factor Family AT2G01570 69.3 3.0e-212 734.9
Chy09g00488 . 55 598 GRAS Transcription Factor Family AT2G01570 62.6 1.4e-188 656.4
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT2G01570 55.8 5.6e-158 554.7
Chy09g00488 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 1.9e-181 632.5
Chy09g00844 . 1 579 GRAS Transcription Factor Family AT1G66350 56.8 4.1e-173 604.7
Chy06g01359 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 2.7e-156 548.9
Chy09g00488 . 55 598 GRAS Transcription Factor Family AT3G03450 62.0 1.9e-179 625.9
Chy09g00844 . 46 578 GRAS Transcription Factor Family AT3G03450 60.0 7.8e-170 594.0
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT3G03450 56.7 2.3e-153 539.3
Chy09g00488 . 48 600 GRAS Transcription Factor Family AT5G17490 56.6 4.1e-160 561.6
Chy09g00844 . 42 578 GRAS Transcription Factor Family AT5G17490 56.8 1.8e-155 546.2
Chy06g01359 . 26 554 GRAS Transcription Factor Family AT5G17490 51.7 1.7e-134 476.5
Chy01g01269 . 1 571 GRAS Transcription Factor Family AT1G21450 57.5 1.6e-173 606.3
Chy06g01877 . 168 544 GRAS Transcription Factor Family AT1G21450 51.1 6.8e-111 398.3
Chy04g01026 . 226 594 GRAS Transcription Factor Family AT1G21450 50.3 4.6e-107 385.6
Chy12g00215 . 324 698 GRAS Transcription Factor Family AT5G59450 56.5 7.0e-127 451.4
Chy02g00456 . 1 541 GRAS Transcription Factor Family AT4G17230 58.3 8.6e-174 607.1
Chy06g01877 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 5.1e-134 474.9
Chy04g01026 . 221 594 GRAS Transcription Factor Family AT4G17230 52.1 1.4e-110 397.1
Chy11g00700 . 134 546 GRAS Transcription Factor Family AT2G04890 66.0 7.2e-160 560.5
Chy06g01877 . 148 544 GRAS Transcription Factor Family AT2G04890 58.7 4.9e-140 494.6
Chy04g01026 . 207 594 GRAS Transcription Factor Family AT2G04890 55.7 4.7e-127 451.4
Chy02g00456 . 161 542 GRAS Transcription Factor Family AT2G04890 58.1 4.4e-125 444.9
Chy02g01488 . 1 472 GRAS Transcription Factor Family AT1G50420 66.2 9.3e-175 610.1
Chy10g01343 . 639 1078 GRAS Transcription Factor Family AT1G50420 59.8 4.2e-143 505.0
Chy06g02042 . 343 706 GRAS Transcription Factor Family AT4G00150 55.7 9.0e-105 377.9
Chy02g00656 CCT 1 610 GRAS Transcription Factor Family AT3G50650 51.1 3.6e-151 531.9
Chy07g01294 CCT 9 538 GRAS Transcription Factor Family AT3G50650 53.4 1.0e-145 513.8
Chy08g00536 . 184 836 GRAS Transcription Factor Family AT3G54220 60.1 1.5e-204 709.5
Chy07g01075 . 71 439 GRAS Transcription Factor Family AT3G54220 64.5 1.8e-136 483.4
Chy02g00841 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 6.0e-159 557.8
Chy11g00187 . 104 496 GRAS Transcription Factor Family AT4G37650 56.3 2.0e-125 446.4
Chy11g01923 . 31 422 GRAS Transcription Factor Family AT4G37650 50.1 1.0e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012214 0 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 0 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18643 PF03514 GRAS 4.20E-121 CL0063 Chy TF