Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01356 ATGAATTCTGAACTTTTGGTGGTATTTCATGCGCTGCTCAAGAATGATGAGATATATCCTGCACTTACTCTTTTTCTCCTTTGGGTGTTCTGGTTTTTTGCTAGCATTCGATTGATAAAAATGACATCTGCAAATCCTTATTTTGATGACATCCGGAACAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGATCTGGAGGAAAACCTAACGTAGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCAAATGGTCACACATTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATACCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACATGAATCTCAGTGTATATATCGACCCTATAACTGTCCATATGCGGGCTCGGAATGCTCGGTTATTGGTGACATTCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGATATGTCAAGTCAAATCCGCAAGAGGTCGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCCGTCTACATAGCTTTCTTGCGGTTTATGGGCGACGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTCATTATCCAACGTAATATGGCACTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGTAACTGGTAGGATTTGGAAGGAGCAGTAA 1035 44.15 MNSELLVVFHALLKNDEIYPALTLFLLWVFWFFASIRLIKMTSANPYFDDIRNKPEVIDPPQDDDMMDVSESVSDPARSGGKPNVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCIYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17806951 17810891 + Chy10G185500.1 Chy10g01356 235731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01356 344 ProSiteProfiles Zinc finger RING-type profile. 96 132 IPR001841 -
Chy10g01356 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 148 IPR013083 -
Chy10g01356 344 MobiDBLite consensus disorder prediction 59 85 - -
Chy10g01356 344 Pfam Seven in absentia protein family 138 337 IPR018121 GO:0005737|GO:0006511|GO:0007275
Chy10g01356 344 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 205 337 IPR008974 GO:0005515
Chy10g01356 344 SUPERFAMILY TRAF domain-like 149 341 - -
Chy10g01356 344 CDD RING-HC_SIAHs 94 132 - -
Chy10g01356 344 CDD Sina 210 338 - -
Chy10g01356 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 204 IPR013083 -
Chy10g01356 344 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 47 344 - -
Chy10g01356 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 47 344 - -
Chy10g01356 344 SUPERFAMILY RING/U-box 88 136 - -
Chy10g01356 344 ProSiteProfiles Zinc finger SIAH-type profile. 149 209 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00073 Chy-Chr5:525004 Chy10g01356 Chy-Chr10:17806951 4.99E-150 dispersed
Chy10g01356 Chy-Chr10:17806951 Chy11g01883 Chy-Chr11:25044873 2.59E-165 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01356 K04506 - csv:101205198 639.417