Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy10g01357 | ATGTCACTCAAGTTACACCATATTGATCTAAAGGGTTATTCAGGTGCCCAGAAAAGGCTGAAGGATCTAACGGCTCATTCTGGCAATAAATACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGCGTTGGCGGAAATACTGCTGTAAACAAAAAGTATGAAGTTTGCGTCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTCACAAATCTAGACGATCAATTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATTACTCTCACACAGCACTTCCAGTACTGATGCCAACCAAGAAAGGAGGAATTATGAAAAAGTTCCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAAAACTGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTTGTCGGTTTAATTAAGGTCAATGTGGTTAGAGGAACAAATTTAGCTGTCAGGGATGTCGTGACGAGCGATCCTTATGTAATTCTCTCATTGGGCCACCAATCTGTGAAAACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACTGCGGCCCGAGCCTGTGAGAGGTCCACAATCTGTGAGCCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTTGATGGGAAGATTCGACAAGACATCTCTTTGAAGCTGCAGAATGTGGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 1116 | 42.29 | MSLKLHHIDLKGYSGAQKRLKDLTAHSGNKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCVPDGNKKPKPDSSIEERFDFIRKKYELLQFTNLDDQFFCPFPPPQKRNSLLSHSTSSTDANQERRNYEKVPTKTRIGSAFRNSWGRKDSEHKNCKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTICEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ* | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 17812983 | 17817562 | + | Chy10G185510.1 | Chy10g01357 | 235732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy10g01357 | 371 | CDD | C2_ArfGAP | 214 | 358 | - | - | |
Chy10g01357 | 371 | CDD | ArfGap | 20 | 126 | - | - | |
Chy10g01357 | 371 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 214 | 308 | IPR035892 | - | |
Chy10g01357 | 371 | Pfam | Putative GTPase activating protein for Arf | 18 | 132 | IPR001164 | GO:0005096 | |
Chy10g01357 | 371 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 7 | 371 | IPR044518 | GO:0005096|GO:0005543 | |
Chy10g01357 | 371 | Pfam | C2 domain | 216 | 306 | IPR000008 | - | |
Chy10g01357 | 371 | PRINTS | HIV Rev interacting protein signature | 29 | 48 | IPR001164 | GO:0005096 | |
Chy10g01357 | 371 | PRINTS | HIV Rev interacting protein signature | 48 | 65 | IPR001164 | GO:0005096 | |
Chy10g01357 | 371 | PRINTS | HIV Rev interacting protein signature | 69 | 90 | IPR001164 | GO:0005096 | |
Chy10g01357 | 371 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
Chy10g01357 | 371 | Gene3D | C2 domain | 214 | 368 | IPR035892 | - | |
Chy10g01357 | 371 | SMART | arf_gap_3 | 17 | 139 | IPR001164 | GO:0005096 | |
Chy10g01357 | 371 | ProSiteProfiles | C2 domain profile. | 197 | 313 | IPR000008 | - | |
Chy10g01357 | 371 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 17 | 132 | IPR001164 | GO:0005096 | |
Chy10g01357 | 371 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 17 | 132 | IPR037278 | - | |
Chy10g01357 | 371 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 7 | 371 | - | - | |
Chy10g01357 | 371 | SMART | C2_3c | 216 | 311 | IPR000008 | - | |
Chy10g01357 | 371 | MobiDBLite | consensus disorder prediction | 145 | 171 | - | - | |
Chy10g01357 | 371 | Gene3D | Arf GTPase activating protein | 7 | 138 | IPR038508 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00089 | Chy-Chr2:571771 | Chy10g01357 | Chy-Chr10:17812983 | 1.92E-114 | dispersed | |
Chy04g02136 | Chy-Chr4:26595409 | Chy10g01357 | Chy-Chr10:17812983 | 3.86E-21 | dispersed | |
Chy10g01357 | Chy-Chr10:17812983 | Chy12g01395 | Chy-Chr12:18082373 | 2.87E-37 | dispersed | |
Chy12g01370 | Chy-Chr12:17900373 | Chy10g01357 | Chy-Chr10:17812983 | 1.02E-23 | dispersed | |
Chy10g01357 | Chy-Chr10:17812983 | Chy12g00386 | Chy-Chr12:4545430 | 1.77E-116 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy10g01357 | K12486 | - | csv:101221541 | 744.577 |