Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy10g01357 ATGTCACTCAAGTTACACCATATTGATCTAAAGGGTTATTCAGGTGCCCAGAAAAGGCTGAAGGATCTAACGGCTCATTCTGGCAATAAATACTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGAGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGCGTTGGCGGAAATACTGCTGTAAACAAAAAGTATGAAGTTTGCGTCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTCACAAATCTAGACGATCAATTTTTCTGTCCTTTTCCACCCCCGCAGAAGAGAAATTCATTACTCTCACACAGCACTTCCAGTACTGATGCCAACCAAGAAAGGAGGAATTATGAAAAAGTTCCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAAAAACTGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTTGTCGGTTTAATTAAGGTCAATGTGGTTAGAGGAACAAATTTAGCTGTCAGGGATGTCGTGACGAGCGATCCTTATGTAATTCTCTCATTGGGCCACCAATCTGTGAAAACACGAGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACTGCGGCCCGAGCCTGTGAGAGGTCCACAATCTGTGAGCCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTTGATGGGAAGATTCGACAAGACATCTCTTTGAAGCTGCAGAATGTGGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1116 42.29 MSLKLHHIDLKGYSGAQKRLKDLTAHSGNKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCVPDGNKKPKPDSSIEERFDFIRKKYELLQFTNLDDQFFCPFPPPQKRNSLLSHSTSSTDANQERRNYEKVPTKTRIGSAFRNSWGRKDSEHKNCKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTICEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17812983 17817562 + Chy10G185510.1 Chy10g01357 235732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy10g01357 371 CDD C2_ArfGAP 214 358 - -
Chy10g01357 371 CDD ArfGap 20 126 - -
Chy10g01357 371 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 214 308 IPR035892 -
Chy10g01357 371 Pfam Putative GTPase activating protein for Arf 18 132 IPR001164 GO:0005096
Chy10g01357 371 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 371 IPR044518 GO:0005096|GO:0005543
Chy10g01357 371 Pfam C2 domain 216 306 IPR000008 -
Chy10g01357 371 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Chy10g01357 371 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Chy10g01357 371 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Chy10g01357 371 MobiDBLite consensus disorder prediction 148 162 - -
Chy10g01357 371 Gene3D C2 domain 214 368 IPR035892 -
Chy10g01357 371 SMART arf_gap_3 17 139 IPR001164 GO:0005096
Chy10g01357 371 ProSiteProfiles C2 domain profile. 197 313 IPR000008 -
Chy10g01357 371 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 132 IPR001164 GO:0005096
Chy10g01357 371 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Chy10g01357 371 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 7 371 - -
Chy10g01357 371 SMART C2_3c 216 311 IPR000008 -
Chy10g01357 371 MobiDBLite consensus disorder prediction 145 171 - -
Chy10g01357 371 Gene3D Arf GTPase activating protein 7 138 IPR038508 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00089 Chy-Chr2:571771 Chy10g01357 Chy-Chr10:17812983 1.92E-114 dispersed
Chy04g02136 Chy-Chr4:26595409 Chy10g01357 Chy-Chr10:17812983 3.86E-21 dispersed
Chy10g01357 Chy-Chr10:17812983 Chy12g01395 Chy-Chr12:18082373 2.87E-37 dispersed
Chy12g01370 Chy-Chr12:17900373 Chy10g01357 Chy-Chr10:17812983 1.02E-23 dispersed
Chy10g01357 Chy-Chr10:17812983 Chy12g00386 Chy-Chr12:4545430 1.77E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy10g01357 K12486 - csv:101221541 744.577