Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00012 ATGATCCATTCTTCCTTGTTTGCAGCTTTTGCAGCCTCGGAAGCCATGCCTCATTCTAAAGGAGATACTCCCATGTTTTCAATGTTCTGTAGATGGAACCCCTTAAGATTGATCATTCAGGGGCTGCTATTATTCTCATTGTTGATGTTGAATTATGGGTCAACAGATCCTGATGTGGAAGGAGAAGCTTTAGTTGATTTGTTAGGGGCACTGAATGATTCCAATCATCAGATAACTGACTGGAATTACCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCATTAGGCTTTTCAGGATCTCTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCCAGCCTGGATTTGCAGAACAATAATATAGCTGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGGCCTATACCTGTGGCTTGGGGTCGACTTGTCGGACTAAAGCATCTGGATCTCTCAGATAACAATTTAACAGGAGAAGTTCAAGCGCAGTTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTACCTTGTGGATTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCTAAGAATTACAAGTTTGGGGTAGTGGCAAGTACTGCAAGTTGTGGAGGTTTCATACTTCTGTCGATTGGTGCCTTCTTTGCTTATAGATGCTTCTACATGCATAAGCTTAAGGATTCTATATTTGTTGATGTTGCTGATGAAGATGAATGTAAACTTTGCTTTGGGCAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACCGCTAACTTTAATGAAGAGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGCGGGAAGGCTGCATTCCTAGGAGAAGTTGAACTAATAAGCGTTGCGGTGCATAGAAATCTCCTACGTTTGATCGGGTTTTGCATAACCACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGTGTGGCACATCACTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGAATGGGCCACAAGGAAACGAATTGCTTTTGGGGCAGCTCATGGTTTGGAGTATTTGCACGAGCACTGTAGTCCTAAGATCATTCATCGCGATCTGAAGGCTGCAAATATCTTACTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCTAAGCTAGTTGATACTAAAGTGACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATATCTGTCCACTGGAAAGTCATCTGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTTACTGGCCAGCGAGCAATAGATTTCTCCCGTCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGCTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAGAACTTAAAGAGCTATAACGAGAAAGAAGTCGAAAACATAGTTCAGGTGGCACTGCTTTGCACTCAAAGTTCACCGGAGGACCGGCCGACAATGGCTGAAGTTGTGAATCTGTTACATGGAGAAGGACTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTGTCCCTCTTGTGTCACCAATTTGTTTGGGGTGAGGAATCAAGTCATGATCAAGAAGCCATACAATTGTCTAAAGCCAGATAG 1860 42.58 MIHSSLFAAFAASEAMPHSKGDTPMFSMFCRWNPLRLIIQGLLLFSLLMLNYGSTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSLGFSGSLSPSITKLKYLASLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPVAWGRLVGLKHLDLSDNNLTGEVQAQFFSIPMFNFSGTGLPCGFRLDKPCVSTSPHRASAKNYKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSIFVDVADEDECKLCFGQIRRFSLREIQLATANFNEENIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGKAAFLGEVELISVAVHRNLLRLIGFCITTSERILVYPFMQNLSVAHHLRDLKPGERSLEWATRKRIAFGAAHGLEYLHEHCSPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 184979 191071 - Chy11G185920.1 Chy11g00012 235773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00012 619 Pfam Leucine rich repeat 126 184 IPR001611 GO:0005515
Chy11g00012 619 PANTHER LRR RECEPTOR-LIKE KINASE 45 619 - -
Chy11g00012 619 SUPERFAMILY L domain-like 61 195 - -
Chy11g00012 619 Gene3D Ribonuclease Inhibitor 57 215 IPR032675 -
Chy11g00012 619 Pfam Leucine rich repeat N-terminal domain 59 97 IPR013210 -
Chy11g00012 619 Gene3D Transferase(Phosphotransferase) domain 1 374 590 - -
Chy11g00012 619 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g00012 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 45 619 - -
Chy11g00012 619 SUPERFAMILY Protein kinase-like (PK-like) 278 570 IPR011009 -
Chy11g00012 619 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Chy11g00012 619 Pfam Protein kinase domain 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy11g00012 619 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Chy11g00012 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Chy11g00012 619 SMART serkin_6 297 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01341 Chy-Chr7:18057291 Chy11g00012 Chy-Chr11:184979 0 dispersed
Chy07g01343 Chy-Chr7:18069032 Chy11g00012 Chy-Chr11:184979 0 dispersed
Chy11g00012 Chy-Chr11:184979 Chy07g01304 Chy-Chr7:17710286 1.10E-169 dispersed
Chy11g00012 Chy-Chr11:184979 Chy10g01091 Chy-Chr10:15982725 3.60E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71526 PF00069 Pkinase 2.00E-44 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00012 - - csv:101206877 1186.02