Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00024 ATGGAAAATGGGTTTGACGGGAGATCATTGGCTGAAAAATTCTCCGAGTTGGGCGTCAGTGCTACTCCAGCAGTGCAGTCTAATTCCCACAATCATGGTAACAACAACGATAGCAACTTGTTTCAGGTTTTGAAAGCTGTTGAAGCAGCTGAGGCTACTATTAAGCAACAGGTGGAGGAAAATAATCGACTGAGGATTGAACTTCAGAAAAAGATTCAGGAACTTGAGAAATATAAGGTTGGTGAGCCTTTGGCTCAAAGGTTTCATTCCACCAACCAATGGAATGAGAATGACCACCATGGATCTAATGGGGGTCATCAATCAGATAATTCAGTTGATAACGAAAGACAGAGATTTATGAATAACATTTCTGTTGTTGATTCACACGGAACACTAGTTCTCCATCAAGATGTTGAGCAAAAAGATGAAGTTTCCATGCGAGTTGATACAGAATCTCGCTTTGAGGACAGCAAGTCGGACAGGATGGTGAATGCTCTTCCTGGTGTTCAGCCTCAAGTTGATAATGCTGGTTGCTCTCAGTTCTCTTCGCCATCTACAACATCTTTCTCTGCTAGCAGGTTTACAATGGATGTAGAATATGATCCACGGATTAAATTGTCTGGACATGGCATAATGCCAAAGGCTGAAGGAAATAATCCCAACAGCCTCTGGAAGCAGGACCTTGTTGTTAAAGTTCAGGAACATGAAGATGAAATTGTGCAGTTGCGCAAGCATCTTGCTGATTATTCAATTAAGGAAGCACAAATACGAAATGAAAAGTATGTCCTGGAAAAACGTATTGCCTATATGCGTTTGGCCTTTGATCAACAACAACAAGATCTTGTTGATGCCGCTTCTAAAGCTCTCTCATACAGACAAGACATAATTGAGGAAAACATTCGTCTTACATATGCATTGCAGGAAGCACAACAAGAGAGAACGACCTTTGTATCATCTCTACTGCCTCTTCTTGCAGAATATTCTCTGCAGCCTCCTGTTCCTGATGCTCAATCCATCATCAGCAATGTCAAGATTCTATTTAAGCACTTGCAGGAGAAGCTTCTTCTGACTGAGACAAAATTGAAGGAGTCCCAGTATCAATTGACACCTTGGCGCTCTGATGCAAGCCACTCAAGTTTTGCACCACAGTCACCCTTCCATTCTATTGGTGCAACCTTGACAGCTTCAACCAAAAATGGCCTTGAACTGGTTCCTCAACCTTCATACTGGAATGGGAAAATGCCAGTTTCTTCTTCTGATGCTCAGACCACAGCTGATTGGGACCTATCAACTCATCATCAGATTGGTTTAGGTGTTGGTGTTGGAAAGAATTTGGAACCAGATGATTTGGGGAGGTATTCACATCATGCAAGCAGTGAAGGAACAAACAAACAGGTAACATTCCGTGAACCTGTAAGCAATAGTGAGATTGATGACCAGGATGTGGTCCACCAAACAGAGAGAGAACCTATCACCAACTGGAGTTCTGGGCAATCCCCTCCTCCTGCCACTTTTGATGAGCCAAGCTCCTCTCATTCTCCAATTCTGCCTTCGGTCCTTGAAGAACCTTCACCTTCATTTTCTGAAGATGATGATCCATTACCTGCAATTGAGGCCCTTCAAATATCTGGCGAAGCTTTTCCAGGACAAGATCTCCAAGCATGTGGATACTCAATTAATGGAACAACTAGCTGTAATTTTGAGTGGGTACGCCATTTGGAAGATGGATCTGTAACTTACATTGAAGGGGCGAAGCAACCAAACTATCGGGTTACTGCAGATGACGTTGACACCTATCTGGCTATTGAAGTACAGCCTTTGGATAACAGAAGGCGCAAGGGAGAGCTGGTAAAGGTTTTTGCCAATGACCACCGAAAGATTACTTGTGATCCCGAAATGCAGAACCAGATAGAGAAGACTCTTTCTAGTGGTCATGCGTCATATAAAGTATCCATGTCGGCTGGATATCTTGATATATGGGAAGCGGCTACACTGTCCATCAAAAGGGAAGGATACAGTATAAAATGTAGTGGGTCTAGTGGTGATGTCATCACGGAAAAATTTTCTCCAAATACAACTGTTTCTATTCTATTTGGACACCCTACGGAGTTTACAATAACTGGTTCTAACAATGTTGACCATCACATGCGAGCGGACAACAATTCTGCAGATGTTAGCTGTTGCAGAGATACCATAGTGCTAACCTTGAGATTATTTATTCTAAGGGCTAGCGAGAGAAGAAAAGGCAGAAAGCGAGTTTTGTTCTTTCACAATACCTTTGAAGCTGAATTAGGTGCTGTCATTCCCGTGGTTAAAACATCTATTCATGGCACTCGCATTATTGGTCGTCTATGTGCTGGAAATAAAAATGGGCTTCTTCTACCACACACCACTACTGACCAAGAACTCCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACAATTGCTTGTAATGATCATGTCGCTCTCGCACATACTGATCTTGATCGGGAAACTGAAGATCTCATTGCTGATGTTCTTGGAGTTGAGGTCTTTAGGCAAACAGTAGCAGGCAACGACCTCGTGGGAAGCTACTGTAGCTTCACAAACAGGGGTGGCTTGGTTCATCCACATACATCTATTGAAGATCTAGATGAGCTATCAACTCTTCTTCAGGTCCCATTAGTTGCTGGAACCGTGAATCGTGGAAGTGCCGTGATTGCTGCTGGGTTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACCAGTGCCACCGAGTTATCGGTCATTGAGAGTGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACTCTTCCTCCTTTGCAAGGAAGTTAGATGGAAACATCATGGGAGATACTGCTCAACGTATTGGGCAAAGTTGGCGATTGCACAGGAAGGGAAAATGCTTGATATCTCTTTATTGCTCCTCAAGGAATGTTCAAACATCACGTAACATTTCAGTTAGTTTCTCATCAATCAATGGAGAAAAAAATCACCAAAACTTTCTGAGGGATGAGAAGGTCCCACCTGATTCAGAACCCCCTAGCTTGAAGGATGTTGATCTTTTATATAATTTTCTTGATCTAAGATCAAAGCTTGTGATATCGACAGGAGCTGGAATAAGTATGGAATGTGGAATTCCTGATTATAAAAGTCCGAATGGAGCTTATAGTTCTGGTGACAGACCTATTGCACATCAGCACAGTGCTTCTGTGACCCAAGAACACATACTGGGAAGCAGCCACTTGAGCAGAAATTCGCTCTTGTTACTGAGCAGGAGAGCCATGAACGTTTCTATTCTTTCACTGTTCTTTTATGGATTTTCACCAAGCATTTCTTCGGCAGCTTTTGCTGAAGATTTCGAGCTTGAAAGATACACAGATTCAAAGGAGGGTTTTACTCTTCTTCGACCATCTTCTTGGGTTAAGGTTGATAAGGCAGGGGCAACAGTTTTGTTTGAAGAGGGGAATAAGGGAAGCAACAATGTTGGTGTTGTAGTGAACCCTGTTCGTCTTACAAGTCTTGGGGAGTTTGGAACTCCTCAATTTGTAGCTGACAAACTTATACAGGCCGAAAAGCGAAAGGAAAGTACAAAGGATGCTGCAGTGGTTGGTGTTGCAGAGAGATCTGGGGAGGGAGGTTTACAAGTGTATGAGTTTGAGTACACGGTGGATAGCACTAGAGGAGGAATGAAGCGAATTTTTTCCGCTGCTTTTGTGGCTTCTAAGAAGCTTTACATTCTTAACATTTCTCACTCTGACAAACCAGAGAGCCCTCTTGATTCACAAAAAAGAATGATGTTGGAGCAAGTTCTTCATTCCTTCGATGCAGCCCCTTCCTCATAA 3933 42.82 MENGFDGRSLAEKFSELGVSATPAVQSNSHNHGNNNDSNLFQVLKAVEAAEATIKQQVEENNRLRIELQKKIQELEKYKVGEPLAQRFHSTNQWNENDHHGSNGGHQSDNSVDNERQRFMNNISVVDSHGTLVLHQDVEQKDEVSMRVDTESRFEDSKSDRMVNALPGVQPQVDNAGCSQFSSPSTTSFSASRFTMDVEYDPRIKLSGHGIMPKAEGNNPNSLWKQDLVVKVQEHEDEIVQLRKHLADYSIKEAQIRNEKYVLEKRIAYMRLAFDQQQQDLVDAASKALSYRQDIIEENIRLTYALQEAQQERTTFVSSLLPLLAEYSLQPPVPDAQSIISNVKILFKHLQEKLLLTETKLKESQYQLTPWRSDASHSSFAPQSPFHSIGATLTASTKNGLELVPQPSYWNGKMPVSSSDAQTTADWDLSTHHQIGLGVGVGKNLEPDDLGRYSHHASSEGTNKQVTFREPVSNSEIDDQDVVHQTEREPITNWSSGQSPPPATFDEPSSSHSPILPSVLEEPSPSFSEDDDPLPAIEALQISGEAFPGQDLQACGYSINGTTSCNFEWVRHLEDGSVTYIEGAKQPNYRVTADDVDTYLAIEVQPLDNRRRKGELVKVFANDHRKITCDPEMQNQIEKTLSSGHASYKVSMSAGYLDIWEAATLSIKREGYSIKCSGSSGDVITEKFSPNTTVSILFGHPTEFTITGSNNVDHHMRADNNSADVSCCRDTIVLTLRLFILRASERRKGRKRVLFFHNTFEAELGAVIPVVKTSIHGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEDLIADVLGVEVFRQTVAGNDLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSAVIAAGLTANDWTAFCGSDTSATELSVIESVFKLREAQPSSIVEEMRKSLIDSYSSSFARKLDGNIMGDTAQRIGQSWRLHRKGKCLISLYCSSRNVQTSRNISVSFSSINGEKNHQNFLRDEKVPPDSEPPSLKDVDLLYNFLDLRSKLVISTGAGISMECGIPDYKSPNGAYSSGDRPIAHQHSASVTQEHILGSSHLSRNSLLLLSRRAMNVSILSLFFYGFSPSISSAAFAEDFELERYTDSKEGFTLLRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRKESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLYILNISHSDKPESPLDSQKRMMLEQVLHSFDAAPSS* 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 305141 347783 + Chy11G186040.1 Chy11g00024 235785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00024 1310 MobiDBLite consensus disorder prediction 93 112 - -
Chy11g00024 1310 Gene3D - 1046 1144 - -
Chy11g00024 1310 PANTHER OS05G0100900 PROTEIN 6 754 - -
Chy11g00024 1310 Pfam eIF-6 family 757 925 IPR002769 GO:0042256|GO:0043022
Chy11g00024 1310 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 1145 1305 - -
Chy11g00024 1310 Coils Coil 47 78 - -
Chy11g00024 1310 MobiDBLite consensus disorder prediction 456 473 - -
Chy11g00024 1310 Coils Coil 225 252 - -
Chy11g00024 1310 SUPERFAMILY Pentein 756 946 - -
Chy11g00024 1310 SUPERFAMILY Mog1p/PsbP-like 1153 1306 IPR016123 -
Chy11g00024 1310 Hamap Translation initiation factor 6 [eif6]. 726 967 IPR002769 GO:0042256|GO:0043022
Chy11g00024 1310 ProSiteProfiles Sirtuin catalytic domain profile. 1050 1310 IPR026590 -
Chy11g00024 1310 MobiDBLite consensus disorder prediction 487 517 - -
Chy11g00024 1310 PANTHER EXPRESSED PROTEIN 6 754 - -
Chy11g00024 1310 MobiDBLite consensus disorder prediction 448 533 - -
Chy11g00024 1310 CDD IF6 756 945 IPR002769 GO:0042256|GO:0043022
Chy11g00024 1310 Gene3D - 535 615 - -
Chy11g00024 1310 SMART eIF6neu2 716 926 IPR002769 GO:0042256|GO:0043022
Chy11g00024 1310 Gene3D - 748 947 - -
Chy11g00024 1310 Pfam PsbP 1152 1305 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Chy11g00024 1310 SUPERFAMILY DHS-like NAD/FAD-binding domain 1034 1090 IPR029035 -
Chy11g00024 1310 TIGRFAM eIF-6: putative translation initiation factor eIF-6 756 946 IPR002769 GO:0042256|GO:0043022
Chy11g00024 1310 Coils Coil 292 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00330 Chy-Chr6:2196575 Chy11g00024 Chy-Chr11:305141 1.32E-76 dispersed
Chy08g01016 Chy-Chr8:17369081 Chy11g00024 Chy-Chr11:305141 1.60E-129 dispersed
Chy11g00024 Chy-Chr11:305141 Chy11g00025 Chy-Chr11:348790 6.69E-42 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00024 - - csv:101216431 1472.99