Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00045 ATGGATGGACAAGCTTCGATATCCAATGGCACAGATGATACGATTGTCTGCTATGCGCCGACGATGATTACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCCCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTACTAGGGAGGAGTTCTAAATTTGCCAACACGGTATTTCCTCTAAGAAGTGTAATGGTGCTTGAGACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTTGAAATGGATCTCTCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCGGAATAGGAGCTGCCTTTTCATTCCAATTGCACAAAGAAAGCCAAAAATTGAACTACAACACTTACGTTATGTTTCTTGGTATTGCGCTCTCTGTGACTGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTTATAAATTCAGAGCTGGGAAGGATTGCTATGGCATCTGCACTTTTCAACGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCGCATCTTTGGCTTCATTATGGGTTGTACTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATTTTCATCGTTAGACCGATGATCTCATGGATGATTCGAAAAACTCCAGAAGGGGAAACTGTGAGTGAGTTCTACATATGTTTGATTCTGACAGGAGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGTTTGGTTATCCCAAATGGTTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGCCTCTTGCTTCCTCTTTTCTTCGCAATAAGTGGGCTTAAGACTAATATTTCTAGCGTAGAAGGAATATTCGCTTGGATATCTATTCTATGTATCACTCTCCTTGCTTTCATTGGCAAAGTCATAGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGTGAAGGCGTCACGTTAGGTTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAACGTCGGAAAGGACCAGAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCTCTCATTATGACAGGGATAATAACACCAGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAATTTAGAGTATTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCAACCTCCTTGATGCTTCCCATCCAACTAAAAGATCCCCAATTTGCATTTACGTGCTACACTTGGTTGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCATTAAATCGAACACAAGCTCAATCAGATCACATCATTAATGCATTCGAGAACTATGAACAACACGTCGATTGCGTCTCTGTTCAACCTCTCACCGCCATTTCCCCTTACTCCACAATGCACGAAGACATCTGCAATTTAGCTGAAGATAAACGAGTTGCGTTCATAATCATCCCATTCCATAAACAACAAACGGTGGATGGAGGAATGGAAGCTTCAAATCCAGCATTTAGATTGGTAAACCAAAATGTATTAGCTAATGCCCCTTGCTCCGTCGGAATTCTAGTCGATCGAGGCTTAAACGGCGCGAATCGAGTCGCATCAAACAAAGGAACTCATTATAACATAATCGTGTTTTTCTTTGGTGGACAAGATGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAATTTAACCGTAATGCGATTCATCGCCGCACAAGAAATAATGGAACCAAAACTAGAAGAAAACACATCAAGAATTTCAACCATGGAAACAGAAATGAACAGAGATAGGAAACTGGACGAAGATTATATAAGCGAATTTAGGGCAAGGAACCCAAACAGTGAGTCAATTACTTACACAGAAAAAGTGTTGAACAACGGCGAAGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTTGGTAGAGGTGAATCTCACATATCACCCCTCACTGCCGGACTAACAGACTGGAGTGAATGTCCAGAGCTGGGAGCAATAGGCGATTTGCTAGCCTCATCGGATTTTGCGGCAACAACTTCAGTTTTGGTAGTGCAACAGTTCGGAACAGCAATGGCGGGGGAGCATGGAGAAGAAGAAGAAGTTACACCACATAATCTTGATCCAAATGATCCTTACCAAAGCTTGAGATCCACGAATTTCAGGCAACATACTCCATCGAGAACTCAAATCATTTATGATACATGA 2514 42.48 MDGQASISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRSSKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKESQKLNYNTYVMFLGIALSVTAFPVLARILAELKLINSELGRIAMASALFNDMCAWVLLALAIALSENDSASLASLWVVLSSAGFVLFCIFIVRPMISWMIRKTPEGETVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNISSVEGIFAWISILCITLLAFIGKVIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEASNPAFRLVNQNVLANAPCSVGILVDRGLNGANRVASNKGTHYNIIVFFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEPKLEENTSRISTMETEMNRDRKLDEDYISEFRARNPNSESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGTAMAGEHGEEEEVTPHNLDPNDPYQSLRSTNFRQHTPSRTQIIYDT* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 506131 508889 + Chy11G186250.1 Chy11g00045 235806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00045 837 MobiDBLite consensus disorder prediction 796 820 - -
Chy11g00045 837 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Chy11g00045 837 Gene3D - 41 439 IPR038770 -
Chy11g00045 837 Gene3D - 478 759 - -
Chy11g00045 837 PANTHER BNAA09G08340D PROTEIN 12 806 - -
Chy11g00045 837 PANTHER CATION/H + ANTIPORTER 12 806 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00045 - - - csv:101219265 1605.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01852 Chy-Chr1:23975401 Chy11g00045 Chy-Chr11:506131 2.64E-117 dispersed
Chy04g00044 Chy-Chr4:495806 Chy11g00045 Chy-Chr11:506131 1.86E-117 dispersed
Chy06g00880 Chy-Chr6:6348128 Chy11g00045 Chy-Chr11:506131 3.14E-09 dispersed
Chy06g01265 Chy-Chr6:11612685 Chy11g00045 Chy-Chr11:506131 2.65E-135 dispersed
Chy06g01550 Chy-Chr6:17348997 Chy11g00045 Chy-Chr11:506131 9.70E-160 dispersed
Chy06g01555 Chy-Chr6:17463401 Chy11g00045 Chy-Chr11:506131 1.97E-159 dispersed
Chy07g01186 Chy-Chr7:16713602 Chy11g00045 Chy-Chr11:506131 0 dispersed
Chy07g01187 Chy-Chr7:16727132 Chy11g00045 Chy-Chr11:506131 0 dispersed
Chy08g00353 Chy-Chr8:8376333 Chy11g00045 Chy-Chr11:506131 0 dispersed
Chy08g00771 Chy-Chr8:15403796 Chy11g00045 Chy-Chr11:506131 0 dispersed
Chy10g00347 Chy-Chr10:8755665 Chy11g00045 Chy-Chr11:506131 1.47E-173 dispersed
Chy11g01399 Chy-Chr11:20402865 Chy11g00045 Chy-Chr11:506131 1.08E-08 dispersed
Chy12g00326 Chy-Chr12:3513187 Chy11g00045 Chy-Chr11:506131 5.18E-157 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00045 . 11 805 Antiporter Super Family AT2G13620 72.4 0.0e+00 1156.4
Chy07g01186 . 15 776 Antiporter Super Family AT2G13620 50.3 1.4e-207 719.9
Chy08g00771 . 74 849 Antiporter Super Family AT3G53720 68.5 1.3e-287 985.7
Chy07g01186 . 86 773 Antiporter Super Family AT3G53720 50.3 1.0e-183 640.6
Chy07g01187 . 83 779 Antiporter Super Family AT3G53720 50.7 3.9e-183 638.6
Chy07g01187 . 1 779 Antiporter Super Family AT5G41610 69.5 9.1e-308 1052.7
Chy07g01186 . 9 797 Antiporter Super Family AT5G41610 67.1 5.7e-302 1033.5
Chy07g01185 . 1 811 Antiporter Super Family AT5G41610 63.6 2.2e-290 995.0
Chy07g01184 . 24 744 Antiporter Super Family AT5G41610 62.9 4.0e-255 877.9
Chy07g01186 . 16 774 Antiporter Super Family AT4G23700 66.8 4.1e-292 1000.7
Chy07g01185 . 11 816 Antiporter Super Family AT4G23700 63.0 7.8e-283 969.9
Chy07g01187 . 9 796 Antiporter Super Family AT4G23700 62.9 9.0e-279 956.4
Chy07g01184 . 24 744 Antiporter Super Family AT4G23700 61.0 1.3e-248 856.3
Chy07g01186 . 9 796 Antiporter Super Family AT3G17630 62.8 3.8e-274 941.0
Chy07g01187 . 11 779 Antiporter Super Family AT3G17630 63.8 1.1e-270 929.5
Chy07g01185 . 4 797 Antiporter Super Family AT3G17630 61.7 4.5e-267 917.5
Chy07g01184 . 24 744 Antiporter Super Family AT3G17630 59.2 3.3e-233 805.1
Chy08g00771 . 6 820 Antiporter Super Family AT3G17630 52.4 3.4e-206 715.3
Chy07g01185 . 4 799 Antiporter Super Family AT1G64170 57.3 7.3e-241 830.5
Chy07g01186 . 5 777 Antiporter Super Family AT1G64170 57.8 8.1e-240 827.0
Chy07g01187 . 15 784 Antiporter Super Family AT1G64170 56.4 1.5e-230 796.2
Chy07g01184 . 24 744 Antiporter Super Family AT1G64170 53.9 2.1e-203 706.1
Chy11g00045 . 11 805 Antiporter Super Family AT2G13620 72.4 0.0e+00 1156.4
Chy07g01186 . 15 776 Antiporter Super Family AT2G13620 50.3 1.4e-207 719.9
Chy07g01185 . 4 799 Antiporter Super Family AT1G64170 57.3 7.3e-241 830.5
Chy07g01186 . 5 777 Antiporter Super Family AT1G64170 57.8 8.1e-240 827.0
Chy07g01187 . 15 784 Antiporter Super Family AT1G64170 56.4 1.5e-230 796.2
Chy07g01184 . 24 744 Antiporter Super Family AT1G64170 53.9 2.1e-203 706.1
Chy07g01186 . 16 774 Antiporter Super Family AT4G23700 66.8 4.1e-292 1000.7
Chy07g01185 . 11 816 Antiporter Super Family AT4G23700 63.0 7.8e-283 969.9
Chy07g01187 . 9 796 Antiporter Super Family AT4G23700 62.9 9.0e-279 956.4
Chy07g01184 . 24 744 Antiporter Super Family AT4G23700 61.0 1.3e-248 856.3
Chy07g01187 . 1 779 Antiporter Super Family AT5G41610 69.5 9.1e-308 1052.7
Chy07g01186 . 9 797 Antiporter Super Family AT5G41610 67.1 5.7e-302 1033.5
Chy07g01185 . 1 811 Antiporter Super Family AT5G41610 63.6 2.2e-290 995.0
Chy07g01184 . 24 744 Antiporter Super Family AT5G41610 62.9 4.0e-255 877.9
Chy07g01186 . 9 796 Antiporter Super Family AT3G17630 62.8 3.8e-274 941.0
Chy07g01187 . 11 779 Antiporter Super Family AT3G17630 63.8 1.1e-270 929.5
Chy07g01185 . 4 797 Antiporter Super Family AT3G17630 61.7 4.5e-267 917.5
Chy07g01184 . 24 744 Antiporter Super Family AT3G17630 59.2 3.3e-233 805.1
Chy08g00771 . 6 820 Antiporter Super Family AT3G17630 52.4 3.4e-206 715.3
Chy08g00771 . 74 849 Antiporter Super Family AT3G53720 68.5 1.3e-287 985.7
Chy07g01186 . 86 773 Antiporter Super Family AT3G53720 50.3 1.0e-183 640.6
Chy07g01187 . 83 779 Antiporter Super Family AT3G53720 50.7 3.9e-183 638.6
Chy01g01852 . 47 791 Antiporter Super Family AT3G52080 54.2 7.3e-233 803.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00045 Chy_Chr11 FPKM 23.858257 26.924751 36.636902 34.245308 122.206505 123.041359 125.648254 40.065472 37.508606 39.035889