Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00054 ATGCCTTCCCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCCTCCGCCGCCCACCAAATCCTTCTCCCTGACATCGCCGCCTCCTGCAACGCCACCCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAGCCGTCTCCCCCAGAATCCCACTCCGCTGCAGATCATTCAGGCCGCCCTCTACCTCTCCTCAGACAATCTCCAGACTGCTAAATCCATGGTGAAGGCCATTCTCGATTCTGCCGAGAAGATTCCCAACCGCAACCGCACCGAGAAGGCGCTAAGCTGTATGGATGCGCTGGGTTATTCGGAGTACAGAATTTCCCTTTCCAACGACGCAATTCCGCTCGGTCGAATTAAAGACGCGCGCGCGTGGTTAAGCGCGTCCCTCCTCTACCAGACCGGTTGCCGGTCGGGGTTGAAGTACGTGAACGACACGCGTGAGGTGGATCAAACGATGTCATTTCTTGACAACTTAACCGTGCTGTCGAGCAACGCGCTGAGCATGGTGGTGGCGTACGATAATTTCGGGAATGAGACGGCGGCGTGGAGACCACCGAGGACGGAGCGAGACGGGTTCTGGGAACGGAGCAGTGGAACGGGGGAGGTGGTGAGAGGGGTGAGGATTCCAACGAAGACGGAGGCGAATGTGACGGTGTGTAAGGATGGGAGTGAGGGGTGTTATAGGAGGGTGCAAGCGGCGGTGGATGCGGCGCCGGGAGAGTCGGCGGTGAGGTTTGTGATACACATAAAGGAAGGGGTTTACGAAGAGAGTGTGAGAGTGGGAATGGAGAAGAAGAATTTGGTGTTTTTGGGGGATGGGATGGGCAAAACGGTAATTACCGGATCTTTGAACGTGGGTCAGCCTGGGATCTCGACTTACAATTCTGCCACCGTCGGAGTTCTTGGGGATGGATTCATTGCTAGTGAACTCACCATTCAAAACACAGCAGGTCCTGACTCCCACCAAGCTGTTGCCTTTCGATCAGACAGTGACCTATCGATCATACATAACTGTGAGTTTATAAGCAATCAAGACACTCTTTACGCCCACTCCCTCCGTCAATTCTACAACTCCTGTCGTATTTTAGGCAACGTGGACTTCATTTTTGGCAACTCAGCCTCCATGTTTCTAAACTGTCATATCTTAATTCGTCCTCACCAACTCAATCCTCAACTCGGAGATGAGAATGCAATCACTGCACATGGGAGGACAGACCCAGCGCAGTCGACTGGGTTTGTGTTCCAAAACTGCTTGATTAATGGCACTGAGGAGTTCATGGCATTGTACTATGCCAATCCTCAGAGGCATAGGACCTTCTTGGGGCGGCCTTGGAAAGAGTATTCGAGAACGGTTTTTATACACTGTGAACTTGAAGCTCTTGTTTCGTCATCCGGATGGATGCCATGGAGTGGAGATATTGGATTGAATACACTATATTATGGGGAGTTTGAGAATTTTGGGACTGGTTCAAATTCGTCAAAACGAGTTGCATGGAGTAATCAAATCCCTGCAGAGCATATCCTTCACGCCTGCAAATCCACCCGTTTCCCCGGTCAATGCGGATCTTCCCTCTCTCACTCCTCTCTCCCCCCCAATCCCTCCCCTCTCCAAATCCTTCAATCCGCCATCGCTTTATCCTCCGACGGTCTAACCACTGCCCAATCCTTGGTTAAACAGATCCTCGATTCCTCTGCCACGAATCTCAATCGTACCACCGCCGCCAAGAATTGCCTCGAGGTCCTACGAAATTCCGATTACCGAATCTCCCTCACCAATGACGCTCTCCACCGCGGTCGAACCAAAGACGCCCGCGCCTGGCTGAGCGCGTCTCTGCTTTACCATTACGATTGCTGGTCAGCGCTTAAATACGCGAACGACACTCAGTTGGTTGATAAAACCATGGCGTTTCTTGATTCTTTAATCGGTCTCTCCAGTAATGCGCTTAGTATGTTGGTGGCTTATGATATTTTCGGAAATGATACGGCGGCGTGGACGCCGCCGAGGACAGAGCGCGATGGGTTTTGGGAAGGCGGAGGTGGAACTGGGTTGGGGTTTAGCGGTGGGTTTCCGGCAAAGGTGACGGCAGATGCGACGGTGTGTAAGGATGGTAGTGGGGGTTGTTATGGAAGTATTCAGAAAGCGGTGGATGCGGCGCCGGAGAACGCGGCGGCGCGTAGGTTTGTGATTCATATTAAAGAAGGCGTTTATGAGGAAATTGTGAGGGTTCCGTTAGAGAAGAAGAATGTTGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATCACTGGCTCATTGAATGTAGGCCAGCCTGGGCTTTCCACTTACAATACTGCCACCCTTGGAGTAGTTGGTGATGGATTCATGGCTAGTGGTCTCACCATTCAAAACACAGCAGGGCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCTGTTATTCAAGATTGTGAGTTTCTAGGCAACCAAGATACTCTCTATGCTCATTCCCTACGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGATTGCGAGATCCTAGTCCGCCCTCGACAACTCAAGCCCGAGAAAGGCGAAAACAACGCCATAACTGCACATGGGAGGACCGACCCTGCTCAATCCACTGGTTTTGTATTCCAAAACTGCCTCATAAATGGAACTCAAGAGTATATGTCATTGTACTACAGCAAGCCTCAAGTGCATAAGAACTTCTTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTTTATACACTGTAATCTGGAGGCTCTTGTGTCCCCGTCGGGGTGGATGCCGTGGAGTGGGGATTTTGCTTTGAAGACTCTGTTCTACGGAGAGTTTGAGAACTCGGGTGCAGGGTCGAAGACGTCGGAGAGAGTGGGGTGGAGTAGTCAGATTCCGGCACAACATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTGAATCATCTGATGAACAAAAAATGTTGAACATGAGAAGTAAAGATGTAAACTTAGATTAG 3093 50.53 MPSLLFLFFLPLHFSSAAHQILLPDIAASCNATRFPDQCASSISQSSRLPQNPTPLQIIQAALYLSSDNLQTAKSMVKAILDSAEKIPNRNRTEKALSCMDALGYSEYRISLSNDAIPLGRIKDARAWLSASLLYQTGCRSGLKYVNDTREVDQTMSFLDNLTVLSSNALSMVVAYDNFGNETAAWRPPRTERDGFWERSSGTGEVVRGVRIPTKTEANVTVCKDGSEGCYRRVQAAVDAAPGESAVRFVIHIKEGVYEESVRVGMEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFIASELTIQNTAGPDSHQAVAFRSDSDLSIIHNCEFISNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASMFLNCHILIRPHQLNPQLGDENAITAHGRTDPAQSTGFVFQNCLINGTEEFMALYYANPQRHRTFLGRPWKEYSRTVFIHCELEALVSSSGWMPWSGDIGLNTLYYGEFENFGTGSNSSKRVAWSNQIPAEHILHACKSTRFPGQCGSSLSHSSLPPNPSPLQILQSAIALSSDGLTTAQSLVKQILDSSATNLNRTTAAKNCLEVLRNSDYRISLTNDALHRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDIFGNDTAAWTPPRTERDGFWEGGGGTGLGFSGGFPAKVTADATVCKDGSGGCYGSIQKAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGLSTYNTATLGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTQEYMSLYYSKPQVHKNFLGRPWKEYSRTVFIHCNLEALVSPSGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVENFIQGDEWIPSSESSDEQKMLNMRSKDVNLD* 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 575542 580869 + Chy11G186340.1 Chy11g00054 235815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00054 1030 PANTHER PECTINESTERASE 8 511 - -
Chy11g00054 1030 PANTHER PECTINESTERASE 512 1011 - -
Chy11g00054 1030 Gene3D - 199 494 IPR012334 -
Chy11g00054 1030 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 173 IPR035513 -
Chy11g00054 1030 SUPERFAMILY Pectin lyase-like 216 505 IPR011050 -
Chy11g00054 1030 SMART PMEI_2 21 172 IPR006501 GO:0004857
Chy11g00054 1030 SMART PMEI_2 507 654 IPR006501 GO:0004857
Chy11g00054 1030 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 8 511 - -
Chy11g00054 1030 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 512 1011 - -
Chy11g00054 1030 MobiDBLite consensus disorder prediction 1010 1030 - -
Chy11g00054 1030 Pfam Plant invertase/pectin methylesterase inhibitor 513 654 IPR006501 GO:0004857
Chy11g00054 1030 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857
Chy11g00054 1030 Gene3D Invertase/pectin methylesterase inhibitor family protein 506 657 IPR035513 -
Chy11g00054 1030 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
Chy11g00054 1030 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 511 654 IPR035513 -
Chy11g00054 1030 TIGRFAM PME_inhib: pectinesterase inhibitor domain 500 654 IPR006501 GO:0004857
Chy11g00054 1030 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 172 IPR006501 GO:0004857
Chy11g00054 1030 CDD PMEI-like_3 514 654 - -
Chy11g00054 1030 CDD PMEI-like_3 28 173 - -
Chy11g00054 1030 SUPERFAMILY Pectin lyase-like 698 1010 IPR011050 -
Chy11g00054 1030 Pfam Pectinesterase 700 1005 IPR000070 GO:0030599|GO:0042545
Chy11g00054 1030 Pfam Pectinesterase 219 505 IPR000070 GO:0030599|GO:0042545
Chy11g00054 1030 Gene3D - 694 1018 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00054 Chy-Chr11:575542 Chy06g00857 Chy-Chr6:6182906 5.94E-93 dispersed
Chy11g00054 Chy-Chr11:575542 Chy01g02125 Chy-Chr1:25934718 2.30E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00054 - - csv:101221165 1024.62