Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00054 | ATGCCTTCCCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCCTCCGCCGCCCACCAAATCCTTCTCCCTGACATCGCCGCCTCCTGCAACGCCACCCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAGCCGTCTCCCCCAGAATCCCACTCCGCTGCAGATCATTCAGGCCGCCCTCTACCTCTCCTCAGACAATCTCCAGACTGCTAAATCCATGGTGAAGGCCATTCTCGATTCTGCCGAGAAGATTCCCAACCGCAACCGCACCGAGAAGGCGCTAAGCTGTATGGATGCGCTGGGTTATTCGGAGTACAGAATTTCCCTTTCCAACGACGCAATTCCGCTCGGTCGAATTAAAGACGCGCGCGCGTGGTTAAGCGCGTCCCTCCTCTACCAGACCGGTTGCCGGTCGGGGTTGAAGTACGTGAACGACACGCGTGAGGTGGATCAAACGATGTCATTTCTTGACAACTTAACCGTGCTGTCGAGCAACGCGCTGAGCATGGTGGTGGCGTACGATAATTTCGGGAATGAGACGGCGGCGTGGAGACCACCGAGGACGGAGCGAGACGGGTTCTGGGAACGGAGCAGTGGAACGGGGGAGGTGGTGAGAGGGGTGAGGATTCCAACGAAGACGGAGGCGAATGTGACGGTGTGTAAGGATGGGAGTGAGGGGTGTTATAGGAGGGTGCAAGCGGCGGTGGATGCGGCGCCGGGAGAGTCGGCGGTGAGGTTTGTGATACACATAAAGGAAGGGGTTTACGAAGAGAGTGTGAGAGTGGGAATGGAGAAGAAGAATTTGGTGTTTTTGGGGGATGGGATGGGCAAAACGGTAATTACCGGATCTTTGAACGTGGGTCAGCCTGGGATCTCGACTTACAATTCTGCCACCGTCGGAGTTCTTGGGGATGGATTCATTGCTAGTGAACTCACCATTCAAAACACAGCAGGTCCTGACTCCCACCAAGCTGTTGCCTTTCGATCAGACAGTGACCTATCGATCATACATAACTGTGAGTTTATAAGCAATCAAGACACTCTTTACGCCCACTCCCTCCGTCAATTCTACAACTCCTGTCGTATTTTAGGCAACGTGGACTTCATTTTTGGCAACTCAGCCTCCATGTTTCTAAACTGTCATATCTTAATTCGTCCTCACCAACTCAATCCTCAACTCGGAGATGAGAATGCAATCACTGCACATGGGAGGACAGACCCAGCGCAGTCGACTGGGTTTGTGTTCCAAAACTGCTTGATTAATGGCACTGAGGAGTTCATGGCATTGTACTATGCCAATCCTCAGAGGCATAGGACCTTCTTGGGGCGGCCTTGGAAAGAGTATTCGAGAACGGTTTTTATACACTGTGAACTTGAAGCTCTTGTTTCGTCATCCGGATGGATGCCATGGAGTGGAGATATTGGATTGAATACACTATATTATGGGGAGTTTGAGAATTTTGGGACTGGTTCAAATTCGTCAAAACGAGTTGCATGGAGTAATCAAATCCCTGCAGAGCATATCCTTCACGCCTGCAAATCCACCCGTTTCCCCGGTCAATGCGGATCTTCCCTCTCTCACTCCTCTCTCCCCCCCAATCCCTCCCCTCTCCAAATCCTTCAATCCGCCATCGCTTTATCCTCCGACGGTCTAACCACTGCCCAATCCTTGGTTAAACAGATCCTCGATTCCTCTGCCACGAATCTCAATCGTACCACCGCCGCCAAGAATTGCCTCGAGGTCCTACGAAATTCCGATTACCGAATCTCCCTCACCAATGACGCTCTCCACCGCGGTCGAACCAAAGACGCCCGCGCCTGGCTGAGCGCGTCTCTGCTTTACCATTACGATTGCTGGTCAGCGCTTAAATACGCGAACGACACTCAGTTGGTTGATAAAACCATGGCGTTTCTTGATTCTTTAATCGGTCTCTCCAGTAATGCGCTTAGTATGTTGGTGGCTTATGATATTTTCGGAAATGATACGGCGGCGTGGACGCCGCCGAGGACAGAGCGCGATGGGTTTTGGGAAGGCGGAGGTGGAACTGGGTTGGGGTTTAGCGGTGGGTTTCCGGCAAAGGTGACGGCAGATGCGACGGTGTGTAAGGATGGTAGTGGGGGTTGTTATGGAAGTATTCAGAAAGCGGTGGATGCGGCGCCGGAGAACGCGGCGGCGCGTAGGTTTGTGATTCATATTAAAGAAGGCGTTTATGAGGAAATTGTGAGGGTTCCGTTAGAGAAGAAGAATGTTGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATCACTGGCTCATTGAATGTAGGCCAGCCTGGGCTTTCCACTTACAATACTGCCACCCTTGGAGTAGTTGGTGATGGATTCATGGCTAGTGGTCTCACCATTCAAAACACAGCAGGGCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCTGTTATTCAAGATTGTGAGTTTCTAGGCAACCAAGATACTCTCTATGCTCATTCCCTACGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGATTGCGAGATCCTAGTCCGCCCTCGACAACTCAAGCCCGAGAAAGGCGAAAACAACGCCATAACTGCACATGGGAGGACCGACCCTGCTCAATCCACTGGTTTTGTATTCCAAAACTGCCTCATAAATGGAACTCAAGAGTATATGTCATTGTACTACAGCAAGCCTCAAGTGCATAAGAACTTCTTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTTTATACACTGTAATCTGGAGGCTCTTGTGTCCCCGTCGGGGTGGATGCCGTGGAGTGGGGATTTTGCTTTGAAGACTCTGTTCTACGGAGAGTTTGAGAACTCGGGTGCAGGGTCGAAGACGTCGGAGAGAGTGGGGTGGAGTAGTCAGATTCCGGCACAACATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTGAATCATCTGATGAACAAAAAATGTTGAACATGAGAAGTAAAGATGTAAACTTAGATTAG | 3093 | 50.53 | MPSLLFLFFLPLHFSSAAHQILLPDIAASCNATRFPDQCASSISQSSRLPQNPTPLQIIQAALYLSSDNLQTAKSMVKAILDSAEKIPNRNRTEKALSCMDALGYSEYRISLSNDAIPLGRIKDARAWLSASLLYQTGCRSGLKYVNDTREVDQTMSFLDNLTVLSSNALSMVVAYDNFGNETAAWRPPRTERDGFWERSSGTGEVVRGVRIPTKTEANVTVCKDGSEGCYRRVQAAVDAAPGESAVRFVIHIKEGVYEESVRVGMEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFIASELTIQNTAGPDSHQAVAFRSDSDLSIIHNCEFISNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASMFLNCHILIRPHQLNPQLGDENAITAHGRTDPAQSTGFVFQNCLINGTEEFMALYYANPQRHRTFLGRPWKEYSRTVFIHCELEALVSSSGWMPWSGDIGLNTLYYGEFENFGTGSNSSKRVAWSNQIPAEHILHACKSTRFPGQCGSSLSHSSLPPNPSPLQILQSAIALSSDGLTTAQSLVKQILDSSATNLNRTTAAKNCLEVLRNSDYRISLTNDALHRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDIFGNDTAAWTPPRTERDGFWEGGGGTGLGFSGGFPAKVTADATVCKDGSGGCYGSIQKAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGLSTYNTATLGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTQEYMSLYYSKPQVHKNFLGRPWKEYSRTVFIHCNLEALVSPSGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVENFIQGDEWIPSSESSDEQKMLNMRSKDVNLD* | 1031 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 575542 | 580869 | + | Chy11G186340.1 | Chy11g00054 | 235815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00054 | 1030 | PANTHER | PECTINESTERASE | 8 | 511 | - | - | |
Chy11g00054 | 1030 | PANTHER | PECTINESTERASE | 512 | 1011 | - | - | |
Chy11g00054 | 1030 | Gene3D | - | 199 | 494 | IPR012334 | - | |
Chy11g00054 | 1030 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 25 | 173 | IPR035513 | - | |
Chy11g00054 | 1030 | SUPERFAMILY | Pectin lyase-like | 216 | 505 | IPR011050 | - | |
Chy11g00054 | 1030 | SMART | PMEI_2 | 21 | 172 | IPR006501 | GO:0004857 | |
Chy11g00054 | 1030 | SMART | PMEI_2 | 507 | 654 | IPR006501 | GO:0004857 | |
Chy11g00054 | 1030 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR | 8 | 511 | - | - | |
Chy11g00054 | 1030 | PANTHER | PECTINESTERASE/PECTINESTERASE INHIBITOR | 512 | 1011 | - | - | |
Chy11g00054 | 1030 | MobiDBLite | consensus disorder prediction | 1010 | 1030 | - | - | |
Chy11g00054 | 1030 | Pfam | Plant invertase/pectin methylesterase inhibitor | 513 | 654 | IPR006501 | GO:0004857 | |
Chy11g00054 | 1030 | Pfam | Plant invertase/pectin methylesterase inhibitor | 26 | 172 | IPR006501 | GO:0004857 | |
Chy11g00054 | 1030 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 506 | 657 | IPR035513 | - | |
Chy11g00054 | 1030 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 24 | 175 | IPR035513 | - | |
Chy11g00054 | 1030 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 511 | 654 | IPR035513 | - | |
Chy11g00054 | 1030 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 500 | 654 | IPR006501 | GO:0004857 | |
Chy11g00054 | 1030 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 4 | 172 | IPR006501 | GO:0004857 | |
Chy11g00054 | 1030 | CDD | PMEI-like_3 | 514 | 654 | - | - | |
Chy11g00054 | 1030 | CDD | PMEI-like_3 | 28 | 173 | - | - | |
Chy11g00054 | 1030 | SUPERFAMILY | Pectin lyase-like | 698 | 1010 | IPR011050 | - | |
Chy11g00054 | 1030 | Pfam | Pectinesterase | 700 | 1005 | IPR000070 | GO:0030599|GO:0042545 | |
Chy11g00054 | 1030 | Pfam | Pectinesterase | 219 | 505 | IPR000070 | GO:0030599|GO:0042545 | |
Chy11g00054 | 1030 | Gene3D | - | 694 | 1018 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy11g00054 | Chy-Chr11:575542 | Chy06g00857 | Chy-Chr6:6182906 | 5.94E-93 | dispersed | |
Chy11g00054 | Chy-Chr11:575542 | Chy01g02125 | Chy-Chr1:25934718 | 2.30E-86 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00054 | - | - | csv:101221165 | 1024.62 |